Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01517 ATGAAAAATGGAAGTTTAGAGCAATGGTTGCATCCTGAGATTTTAAACGAAGATCATCCAATGACATTGAGCCTTGGTAAAAAATTAAACATAATTATCGATGTTGCTGATGCATTACATTATCTTCATCAAGAATGTGAGCAATTAGTTCTTCATTGTGATATAAAGCCAAACAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGAATAGCAAGACTTGTCTTGGCCATTGGTGGCAGCTCTCAAAAGGATACGAGTACAATTGGAATTAAAGGGACGGTTGGTTATGCTCCTCCAGAGTACGGAATGGGTTCTGAAGTTTCCACATGTGGTGACATGTATAGTTTTGGAATTCTGGTGTTGGAAATGCTTACAGGTAGAAGACCTACTGATGAAGTTTTTGAAGACGGTCAAAATCTGCATAACTTTGTTGCAATATCATTTCCTGATAACCTTATGAAGATTTTAGACCCACATCTTGTATCAAGTGATGTAGAAGTAGCAATACAAGATGGAAATCATGAAAATCTCATTCCAACTATTGAAGAGTGCTTAGTTTCACTTTTTAGGATTGGAATTATTTGTTCGATGGAATCACCGAAAGAAAGAATGAATATTGCAGATATCACTGGAGAGCTTAGCAAAATTAAGAAGGCCTTTGTCACCGGTGAGATAAACTGA 696 0.3678 MKNGSLEQWLHPEILNEDHPMTLSLGKKLNIIIDVADALHYLHQECEQLVLHCDIKPNNVLLDDDMVAHVSDFGIARLVLAIGGSSQKDTSTIGIKGTVGYAPPEYGMGSEVSTCGDMYSFGILVLEMLTGRRPTDEVFEDGQNLHNFVAISFPDNLMKILDPHLVSSDVEVAIQDGNHENLIPTIEECLVSLFRIGIICSMESPKERMNIADITGELSKIKKAFVTGEIN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01517 231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Trre10g01517 231 Pfam Protein kinase domain 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01517 231 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01517 231 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 230 - -
Trre10g01517 231 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 223 - -
Trre10g01517 231 SMART serkin_6 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01517 231 Gene3D Transferase(Phosphotransferase) domain 1 1 228 - -
Trre10g01517 231 SUPERFAMILY Protein kinase-like (PK-like) 1 216 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01517 Trre-Chr10 12951314 12952125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01517 1 225 Receptor kinase-like Gene Family AT3G47580 42.982 3.26e-60 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01517 Pkinase 1.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01517 - - mtr:11405832 386.726