Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01479 ATGATATCCCTTGATGATGCCGCAAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATTAGAACAAAAGTTAGGCACCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATCAAGAAGACCCATACCACAAATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATGGAATGAGGCATCACTTTACAATCAAAACAAAATGAGTCTAGGAAAAGGGCATTTGGAAATGATATTACAAACATTAGCTTTGTGCGGAACAGAACGGATTTGTTCATGGGTGGGGACTTCAGCCAGAACCTTAACAAGCGAAAGACAATGGAAAATGATAGTGGGCTGTTTCAGGATGACAAGAAGAATATGA 384 0.3932 MISLDDAARLLLGDAYNSSTIRTKVRHLYDIANVLTSMNLIKKTHTTNTRKPAFRWLGLKGKTWNEASLYNQNKMSLGKGHLEMILQTLALCGTERICSWVGTSARTLTSERQWKMIVGCFRMTRRI 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01479 127 Gene3D - 1 60 IPR036388 -
Trre10g01479 127 PANTHER TRANSCRIPTION FACTOR E2F 1 66 IPR015633 GO:0000978|GO:0006357
Trre10g01479 127 SMART E2F_TDP_2 1 58 IPR003316 GO:0005667|GO:0006355
Trre10g01479 127 SUPERFAMILY "Winged helix" DNA-binding domain 7 59 IPR036390 -
Trre10g01479 127 Pfam E2F/DP family winged-helix DNA-binding domain 2 58 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01479 Trre-Chr10 12473250 12473843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01479 1 62 E2F-DP Transcription Factor Family AT3G48160 74.194 7.34e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre10g01479 E2F_TDP 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01479 K09391 - gmx:100806151 108.997