Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01475 ATGCCACAGAATTGCATAGCACCAAAACCTGAATACTGCAATAGTACTCTCTCTTTGGAAGGATCACCACATATGACTGACCCTCATAGCTCAAATAATGAACAATCATTACCAAAACTCATTATGTATCCTATAACTTTGAAGTTTGAGGATTTAGTGTACAAAGTGAAAGTAAACCAGAAAGAAAAAACTATACTAAATGGAATCACAGGTGTGGTGTGTCCAGGAGAAATACTAGCTATGTTAGGACCATCAGGCAGTGGCAAAACCACACTCCTTACAGCTCTTGGAGGCCGTTTAGCCGGCAAACTAACCGGAAAAACCACATACAACAATCAACCTTTCTCAGGTTCAATAAAAAGAAGAACCGGTTTCGTAGCTCAAGATGATGTTCTTTACCCTCACTTAACCGTAACCGAAACTCTAGTGTTTACTGCACTTTTAAGGCTTCCACAAACCTTAACAAGAGATGAAAAAGTTGAACATGTTGAGAGAGTTATAACTGAGTTAGGACTAATTAATTGTAGGAATAGTATGATTGGAGGACCACTTTTGAGAGGTATATCAGGTGGTGAAAAAAGAAGAGTGAGTATAGGACAAGAAATGTTGATTAATCCAAGTTTATTGTTGCTTGATGAACCTACTTCTGGTTTAGATTCTACAACAGCTTTAAGGATCTTGAACACTATAAAAAAACTTGCTAGTGGTGGTAGAACAATTGTCACAACAATTCATCAACCTTCAAGTAGACTCTATTATATGTTTGATAAGGTTGTGTTACTATCTGAAGGGTGTCCTATCTATTATGGTCCTGCTTCAACTGCTCTTGAATATTTCTCATCTGTTGGTTTCTCAACTAGCGTGACGGTTAATCCAGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGCTCCAGACTCTAAGCATGTAACTGAACAAAGTGAGGCTTTGGAACATGAGAGGAAGATTGTGAAAGAATCTCTCATTTCTGCTTATGACAAGAACATAGCTACAAGGCTAAAAGCTGAGGTTTGTAGCATGGAAGTGAATAACTACAACAACATCACAAAAGATTCTTGCACAAGGAATCAAATGAAACCAGAACAATGGTGTACAACCTGGTGGTATCAGTTCACTGTATTATTACAAAGGGGAGTGAGGGAAAGAAGACATGAAGCCTTCAATAGGCTTAGAATATTCCAAGTCATAAGTGTAGCTTTTCTAGCTGGACTCTTATGGTGGCATACACCAGAATCACACCTTGAAGATAGGACAGCTTTGCTATTTTTCTTTGCTGTGTTTTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACGTTTCCACAAGAACGAAGAATGCTTATAAAAGAACGATCCTCCGGAATGTACCGTCTTTCATCGTACTTTCTAGCAAGAACAATAGGAGACTTACCACTAGAGCTAGCACTTCCAACAGCATTTGTGATCATATTATATTGGATGGGAGGACTTAAACCTGATCTTATGACTTTCGTCCTTTCGCTTCTCGTTGTTCTTTACAGTGTTGTTGTCTCACAAAGTCTAGGATTAGCATTTGGTGCTATTTTGATGGAGATTAAACAAGCAACTACACTAGCTTCTGTTACAACACTTGTTTTTCTCATTGCTGGAGGTTACTATATACAACAGATTCCACCTTTTATAGTTTGGCTTAAGTACTTAAGCTATAGCTACTACTGTTACAAGCTTCTACTTGGTGTTCAATACAGTGAAAATGATTATTATCAATGCTCAAATGGAGAGTTATGCAAGGTTATGGATTTTCCTCCAATTAAATCAATGGGATTGAATAATATGTGGGTTGATGTCTCCATCATGGCTATGATGTTGGTAGGTTATAGATTAGTAGCTTATTTTGCACTTCATAGAGTTAGGTAA 1917 0.3792 MPQNCIAPKPEYCNSTLSLEGSPHMTDPHSSNNEQSLPKLIMYPITLKFEDLVYKVKVNQKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLAGKLTGKTTYNNQPFSGSIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPQTLTRDEKVEHVERVITELGLINCRNSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKKLASGGRTIVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALEYFSSVGFSTSVTVNPADLLLDLANGIAPDSKHVTEQSEALEHERKIVKESLISAYDKNIATRLKAEVCSMEVNNYNNITKDSCTRNQMKPEQWCTTWWYQFTVLLQRGVRERRHEAFNRLRIFQVISVAFLAGLLWWHTPESHLEDRTALLFFFAVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVIILYWMGGLKPDLMTFVLSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYSENDYYQCSNGELCKVMDFPPIKSMGLNNMWVDVSIMAMMLVGYRLVAYFALHRVR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01475 638 CDD ABCG_EPDR 44 270 - -
Trre10g01475 638 Pfam ABC transporter 67 216 IPR003439 GO:0005524
Trre10g01475 638 FunFam ABC transporter G family member 22 53 282 - -
Trre10g01475 638 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524|GO:0016887
Trre10g01475 638 Gene3D - 46 283 IPR027417 -
Trre10g01475 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 281 IPR027417 -
Trre10g01475 638 Pfam ABC-2 type transporter 376 582 IPR013525 GO:0016020|GO:0140359
Trre10g01475 638 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 288 IPR003439 GO:0005524
Trre10g01475 638 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 630 - -
Trre10g01475 638 Pfam ABC-2 type transporter 245 346 IPR043926 GO:0140359
Trre10g01475 638 SMART AAA_5 75 265 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01475 Trre-Chr10 12451867 12454601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01475 45 264 Calmodulin-binding Proteins AT2G36910 28.821 2.84e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01475 K05681 - gmx:100780191 1078.16