Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01473 ATGAGGAGTGACCCTTGGAAGGCCCATTTGGGCATGGCAGTGGTACAAGTATTCAATGGTGGCTACCATGTTATTACTAAAGTAGCCCTTAATGCTGGAGTTAACCAATTAGTTTTCTGCTTCTATAGGGATCTCCTTGCCCTCTTCATTCTTTTTCCCATAGCTTTCTTCAAAGAAAGACAGACAAGGCCACCCATTACTAAACAGCTACTGATGACATTCTTCTTTCTTGGATTAACTGGGATATTTGGAAACCAGCTGTTGTTTCTTATTGGTTTAAGTTATACTAATCCAACTTATGCTGCTGCATTACAGCCAGCTATTCCTGTCTTTACCTTTCTGCTTGCTGTGATTATGGGTGTAGAAAGAGTGAACTTGCAGAGTTTTGAAGGTCTAGCAAAGATTGGAGGAACTATTGTATGTGTTTCGGGTGCCATATTGATGGTTTTGTATCGCGGTCCATCTTTGATAGGTTATACAGAACTGATCATTACACCACAGAGTGAAATAAAAGATCTTGGAATAGATAATTTTCAACTTGGAGTTGTGTTCTTGATAGGAAACTGCATGTGCATGGCTGCTTTCCTAGCCATCCAGGCGCCGGTATTAAAAAAGTATCCTGCAAATCTATCTTTGACAGCATATTCATTCTTCTTTGGAGTTGTACTAATGGCGATAGTCTCATTATTCATGACTGATTTGTCAAGTGACTGGATTTTGACACAATCAGAAATACTTGCTGTTGTTTATGCTGGAACTATTACATCTGCCTTTAATTATGGAGTCATTAGTTGGTGCAACAAGATATTGGGGCCTGCTTTAGTTGCTTTATACAATCCACTTCAACCTGGTTTTTCTGCCCTTCTGTCTCAGATATTTCTTGGAAGTCCAATTTACCTTGGAAGGTATAGACTTAATAAGATATCTTATCTAGTTAAGCTTGATGAACTACTTCCGTTTTCTATAGCATGCATTGTGAAATCATGTTTTCATGAAATTTCTTATTGTTCTTATTGTTCTTTGATCATCGCTGGTCTTTATACCGTTACCTGGGCATCTCATAAAGAAAGACAGGAAACTGTTGGAACTACATCTGATGGCTCTTTGGTCTCTGAACCACTTATTATTCATGAAAAAAGTGCACACCAAACCTTATCTCTGCAAGCGGAGAAGTTGTTTTCAAGATTTGAACACATGACTTCTATATCACAAGATATCAACCTTGAACACATGGTTTGA 1239 0.3826 MRSDPWKAHLGMAVVQVFNGGYHVITKVALNAGVNQLVFCFYRDLLALFILFPIAFFKERQTRPPITKQLLMTFFFLGLTGIFGNQLLFLIGLSYTNPTYAAALQPAIPVFTFLLAVIMGVERVNLQSFEGLAKIGGTIVCVSGAILMVLYRGPSLIGYTELIITPQSEIKDLGIDNFQLGVVFLIGNCMCMAAFLAIQAPVLKKYPANLSLTAYSFFFGVVLMAIVSLFMTDLSSDWILTQSEILAVVYAGTITSAFNYGVISWCNKILGPALVALYNPLQPGFSALLSQIFLGSPIYLGRYRLNKISYLVKLDELLPFSIACIVKSCFHEISYCSYCSLIIAGLYTVTWASHKERQETVGTTSDGSLVSEPLIIHEKSAHQTLSLQAEKLFSRFEHMTSISQDINLEHMV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01473 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 151 - -
Trre10g01473 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 300 - -
Trre10g01473 412 Pfam EamA-like transporter family 9 141 IPR000620 GO:0016020
Trre10g01473 412 Pfam EamA-like transporter family 180 300 IPR000620 GO:0016020
Trre10g01473 412 PANTHER WAT1-RELATED PROTEIN 10 360 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01473 Trre-Chr10 12414747 12417760 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01473 1 251 Nodulin-like Gene Family AT3G45870 62.357 1.03e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01473 - - gmx:100793730 501.13