Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01465 ATGGGGGGTGAAACATGGAAGGCACATTTGGCTATGGCATTGGTGCAACTATTCAATGGTGGCTATCATGTAATTACCAAAGTAGCCCTTAATGTTGGGGTTAATCAGTTAGTTTTCTGTCTCTACAGAGATCTACTTGCCCTTTCAATCCTTGCTCCTATTGCTTATATTCGTGAAAAACGGACACGACCACCCATTACTAAGAACCTATTGATTTCATTCTTCTTTCTTGGATTAACTGGGATATTCGGCAACCAACTTCTGTTTCTTATTGGTTTGAGCTATACAAATCCAACTTATGCTGCTGCTACACAGCCAGCCATTCCAGTCTTTACATTTTTGTTCGCTGTAATGATGGGTACAGAAAAAGTGAACTTGCGTAGATTTGAAGGTCTGGCAAAGGTTTTAGGAACTCTTATCTGTGTTTCTGGTGCCATATTGATGGTTTTGTATCGCGGTCCAGTTCTGATAGGATATGCAGAAATTGATCATGTAGCACGAAATGAAATTAGTGTGAGAGGTCAACCTGAGCCTTCTGGATGGTTTATCGGTGCTTTACAGGATCTTGGGTTTGGCCATTTTCATCTTGGGGTTCTGTGCTTGATAGGGAATTGCATGTGTATGGCTGCTTTTCTGGCCATTCAGGCACCAGTATTAAAAAAATATCCTGCAAATCTATCTGTCACGGCATATTCATATTTCTTCGGAGCTGCTATGATGGTGACAGTGTCGTTTTTAATGACTAACGAGTCAACAGACTGGAGTTTGACATCGTCTGAAGTACTTGCTGTTATTTATGCCGGAACTGTTGCATCTGCCCTTAACTATGGACTCATTACATGGTGCAACAAGATAATAGGACCAGCTTTGGTTGCCCTATACAATCCACTTCAACCTGCATTTTCTGCCCTATTGTCTCGAATATTCCTCGGAAGTCCAATTTACTTGGGAAGCATCATAGGAGGATCATTTATCATTGCTGGTCTATATACGGTTACTTGGGGATCATATAGAGAAAGAAATGCAACAGTTGGAGTTAGTTGGGAAGCTGAACCGCTTATCCGAGATAAAAATTCATATCATGTTTTTTCTGTGTCCTCTAGTGTATCTTCAAGTCCAAAATCAGCAGCAGATTAA 1137 0.4081 MGGETWKAHLAMALVQLFNGGYHVITKVALNVGVNQLVFCLYRDLLALSILAPIAYIREKRTRPPITKNLLISFFFLGLTGIFGNQLLFLIGLSYTNPTYAAATQPAIPVFTFLFAVMMGTEKVNLRRFEGLAKVLGTLICVSGAILMVLYRGPVLIGYAEIDHVARNEISVRGQPEPSGWFIGALQDLGFGHFHLGVLCLIGNCMCMAAFLAIQAPVLKKYPANLSVTAYSYFFGAAMMVTVSFLMTNESTDWSLTSSEVLAVIYAGTVASALNYGLITWCNKIIGPALVALYNPLQPAFSALLSRIFLGSPIYLGSIIGGSFIIAGLYTVTWGSYRERNATVGVSWEAEPLIRDKNSYHVFSVSSSVSSSPKSAAD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01465 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 150 - -
Trre10g01465 378 PANTHER WAT1-RELATED PROTEIN 10 340 IPR030184 GO:0016020|GO:0022857
Trre10g01465 378 Pfam EamA-like transporter family 196 333 IPR000620 GO:0016020
Trre10g01465 378 Pfam EamA-like transporter family 8 148 IPR000620 GO:0016020
Trre10g01465 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01465 Trre-Chr10 12330821 12334577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01465 4 267 Nodulin-like Gene Family AT3G45870 70.833 2.17e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01465 - - psat:127119930 620.928