Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01464 ATGGCAGCAGCAGTTTCAGGATCAATGGGGGGTGAAACATGGAAGGCACATTTGGCTATGGCATTGGTGCAACTATTCAATGGTGGCTATCATGTAATTACCAAAGTAGCCCTTAATGTTGGGGTTAATCAGTTAGTTTTCTGTCTCTACAGAGATCTACTTGCCCTTTCAATCCTTGCTCCTATTGCTTATATTCGTGAAAAACGGACACGACCACCCATTACTAAGAACCTATTGATTTCATTCTTCTTTCTTGGATTAACTGGGATATTCGGCAACCAACTTCTGTTTCTTATTGGTTTGAGCTATACAAATCCAACTTATGCTGCTGCTACACAGCCAGCCATTCCAGTCTTTACATTTTTGTTCGCTGTAATGATGGGTACAGAAAAAGTGAACTTGCGTAGATTTGAAGGTCTGGCAAAGGTTTTAGGAACTCTTATCTGTGTTTCTGGTGCCATATTGATGGTTTTGTATCGCGGTCCAGTTCTGATAGGATATGCAGAAATTGATCATGTAGCACGAAATGAAATTAGTGTGAGAGGTCAACCTGAGCCTTCTGGATGGTTTATCGGTGCTTTACAGGATCTTGGGTTTGGCCATTTTCATCTTGGGGTTCTGTGCTTGATAGGGAATTGCATGTGTATGGCTGCTTTTCTGGCCATTCAGGCACCAGTATTAAAAAAATATCCTGCAAATCTATCTGTCACGGCATATTCATATTTCTTCGGAGCTGCTATGATGGTGACAGTGTCGTTTTTAATGACTAACGAGTCAACAGACTGGAGTTTGACATCGTCTGAAGTACTTGCTGTTATTTATGCCGGAACTGTTGCATCTGCCCTTAACTATGGACTCATTACATGGTGCAACAAGATAATAGGACCAGCTTTGGTTGCCCTATACAATCCACTTCAACCTGCATTTTCTGCCCTATTGTCTCGAATATTCCTCGGAAGTCCAATTTACTTGGGAAGCATCATAGGAGGATCATTTATCATTGCTGGTCTATATACGGTTACTTGGGGATCATATAGAGAAAGAAATGCAACAGTTGGAGTTAGTTGGGAAGCTGAACCGCTTATCCGAGATAAAAATTCATATCATGTTTTTTCTGTGTCCTCTAGTGTATCTTCAAGTCCAAAATCAGCAGCAGATTAA 1161 0.41 MAAAVSGSMGGETWKAHLAMALVQLFNGGYHVITKVALNVGVNQLVFCLYRDLLALSILAPIAYIREKRTRPPITKNLLISFFFLGLTGIFGNQLLFLIGLSYTNPTYAAATQPAIPVFTFLFAVMMGTEKVNLRRFEGLAKVLGTLICVSGAILMVLYRGPVLIGYAEIDHVARNEISVRGQPEPSGWFIGALQDLGFGHFHLGVLCLIGNCMCMAAFLAIQAPVLKKYPANLSVTAYSYFFGAAMMVTVSFLMTNESTDWSLTSSEVLAVIYAGTVASALNYGLITWCNKIIGPALVALYNPLQPAFSALLSRIFLGSPIYLGSIIGGSFIIAGLYTVTWGSYRERNATVGVSWEAEPLIRDKNSYHVFSVSSSVSSSPKSAAD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01464 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 260 347 - -
Trre10g01464 386 Pfam EamA-like transporter family 204 341 IPR000620 GO:0016020
Trre10g01464 386 Pfam EamA-like transporter family 16 156 IPR000620 GO:0016020
Trre10g01464 386 PANTHER WAT1-RELATED PROTEIN 18 348 IPR030184 GO:0016020|GO:0022857
Trre10g01464 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01464 Trre-Chr10 12330821 12334601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01464 12 275 Nodulin-like Gene Family AT3G45870 70.833 1.79e-125 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01464 - - psat:127119930 630.557