Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01442 ATGCTTCCATTTCAGTGTCGCCGCCGCCACAAATCCGAAATGGCTTACCTCACCACCCTCATCTGCATTCTCCTCCTCTTCTTCCCGGCGACAACCTCTCAAACACAAATCCTCAATCACACTTTCGAAACCTTCAATTCCACTAGCCTCAACTTACTCGATGTTATACCCTCCGCATCGATCAACGGAGGAGCTTTACAAGTCACCCAAGACAGCGCCGGAAGCTCAAAAATCGTCACCCTCTACAACAACTCCGGCAGAATCTTTTTCAAAACCCCCTTCAAACTCTGGGACGACAACGAAAAACTCGCTTCCTTCAACACCTCTTTCCTCGTCAACGTCTTTCGCCTCAACAACGGCGAAACTCCCGGCGAAGGTCTAGCTTTCATCATCGCACCTTCTCTTACCATTCCTCTCAACAGCTCTGGCGGTTACCTCGGTTTAACAAACGCAACAACAGACGGTAACGTAACTAACCGTTTCGTCGCCGTTGAACTTGACACCGTTAAACAAGACTTCGATATTAACAACAATCACATGGGACTCGATATTAACAGCGTTCATTCCAACGTTTCTGTTCCTCTCGATTTCGAAATCGCTCCTAACGGAACTAAGTTGTACGTTTTATGGATTGAATACGACGGTGATCGGAGAAACATTGATGTTTACATGGCGGAGCAACCTTCAAGAGATTTACCTATAGTAAAAAAACCGGTTAAACCGGTTTTAAATTCGAGTTTGGATCTAAAACAATGGGTGAACCGGGAATCTTATTTTGGGTTTTCTGCTTCAACCGGAAATAATATTGAGTTAAATTGTGTCCTTAAATGGAATATTTCAATTGAGGTTTTTGATGAAAAGGGTAAAAATGGAAAAGCATTGGCTATTGGATTAGGTGTTGGGATTCCTGTATTATTTATTTTAATTGGTGGATTAGGGTGGTATTATTATTTGATTAAGAAGAAAAAAAGAGATGAAAATTATGGTTCTAATTCTCAAATTATGGGGACATTGAAGAGTTTACCAGGAACACCAAGAGAGTTTAATTATCAGGAATTGAAGAAAGCTACTAATAATTTTGATGAAAAGTTTAAACTTGGTGAAGGTGGATACGGTGTCGTTTATAGAGGAATATTGCCTAAGGAGAAATTAGAAGTTGCTGTTAAGAAATTTTCTAGAGATAAGATGAAAAGTACTGATGATTTCTTGGCTGAACTTACTATTATCAATCGTCTTCGTCATAAACATCTTGTTAAATTACAAGGATGGTGCCACAAAAACGGAGTATTGCTCTTGGTATATGACTACATGCCTAATGGAAGTTTAGACGACCACATATTTTGTGAGGAAGGAACAAGCACAACCCCGCTAAGTTGGCCTTTAAGGTACAAAATCCTATCAGGTGTTGCTTCTGCATTGAATTATCTCCACAACGAGTATGATCAAACAGTCGTTCACAGAGACCTTAAAGCAAGCAACATAATGCTAGACTCAGATTTCAACGCTCGTTTAGGAGATTTCGGGTTAGCACGCGCACTCGAGAATGAAAAAACATCCTATGCAGAATTAGAAGGAGTACAAGGAACAATGGGATACATAGCACCAGAATGTTTCCATACAGGAAAAGCAACAAGAGAATCAGATGTTTACGGATTTGGTGCTGTGTTACTTGAAACTGTTTGTGGTCAAAGACCATGGACTAAAATCGAAGGGTACCAATTTTTGGTCGATTGGGTTTGGTATTTGCATCGCGAAGGAAGAATATTGGAAGCAGTGGATAAAAGTGTTGGCAATGAATATGATGTTGAAGAGGTCGATAGAATATTGAAACTGGGATTAATTTGTTCTCATCCGGTTGCTAGTGAGAGACCAAATTTGCAAACAATTGTTCAGATTTTATCTGGTTCAGTTAATGTGCCTTATGTGCCGCCTTTTAAGCCGTCTTTTATGTGGCCCGCCGTGGATTTAGCTAGTCTTGCAAGTACTGATTTTACAGGAGGAACAACTACTAGTGAGTATACACCAATCAATAGTAACACTACACAATCTTCTTTGCGTGTTGAATTCTCAGATAATGGTTCCATGGTCTAA 2091 0.4017 MLPFQCRRRHKSEMAYLTTLICILLLFFPATTSQTQILNHTFETFNSTSLNLLDVIPSASINGGALQVTQDSAGSSKIVTLYNNSGRIFFKTPFKLWDDNEKLASFNTSFLVNVFRLNNGETPGEGLAFIIAPSLTIPLNSSGGYLGLTNATTDGNVTNRFVAVELDTVKQDFDINNNHMGLDINSVHSNVSVPLDFEIAPNGTKLYVLWIEYDGDRRNIDVYMAEQPSRDLPIVKKPVKPVLNSSLDLKQWVNRESYFGFSASTGNNIELNCVLKWNISIEVFDEKGKNGKALAIGLGVGIPVLFILIGGLGWYYYLIKKKKRDENYGSNSQIMGTLKSLPGTPREFNYQELKKATNNFDEKFKLGEGGYGVVYRGILPKEKLEVAVKKFSRDKMKSTDDFLAELTIINRLRHKHLVKLQGWCHKNGVLLLVYDYMPNGSLDDHIFCEEGTSTTPLSWPLRYKILSGVASALNYLHNEYDQTVVHRDLKASNIMLDSDFNARLGDFGLARALENEKTSYAELEGVQGTMGYIAPECFHTGKATRESDVYGFGAVLLETVCGQRPWTKIEGYQFLVDWVWYLHREGRILEAVDKSVGNEYDVEEVDRILKLGLICSHPVASERPNLQTIVQILSGSVNVPYVPPFKPSFMWPAVDLASLASTDFTGGTTTSEYTPINSNTTQSSLRVEFSDNGSMV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01442 696 Gene3D - 36 296 - -
Trre10g01442 696 PANTHER - 64 644 - -
Trre10g01442 696 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 283 IPR013320 -
Trre10g01442 696 FunFam probable L-type lectin-domain containing receptor kinase S.5 345 436 - -
Trre10g01442 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Trre10g01442 696 Gene3D Transferase(Phosphotransferase) domain 1 437 639 - -
Trre10g01442 696 ProSiteProfiles Protein kinase domain profile. 360 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01442 696 Pfam Protein kinase domain 362 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01442 696 Pfam Legume lectin domain 39 286 IPR001220 GO:0030246
Trre10g01442 696 FunFam probable L-type lectin-domain containing receptor kinase S.5 437 638 - -
Trre10g01442 696 ProSitePatterns Protein kinases ATP-binding region signature. 366 390 IPR017441 GO:0005524
Trre10g01442 696 CDD lectin_legume_LecRK_Arcelin_ConA 38 278 IPR001220 GO:0030246
Trre10g01442 696 Gene3D Phosphorylase Kinase; domain 1 345 436 - -
Trre10g01442 696 SMART serkin_6 360 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01442 696 CDD STKc_IRAK 366 633 - -
Trre10g01442 696 SUPERFAMILY Protein kinase-like (PK-like) 342 653 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01442 Trre-Chr10 12173920 12178291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01442 38 668 Receptor kinase-like Gene Family AT5G55830 37.874 4.29e-133 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre10g01442 Pkinase 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01442 - - tpra:123907446 1278.85