Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01436 ATGATGATTATTGATAATCTTGCTGGATTGGATTCGTACCTTGATCAAGAGATGCATCTTGAAGTTCAACCTGTTGTTGTAGAGGAAACTTCAATGAATGTTGAGAATGTGTTGAATGATGTTAAAATTGGCAAGGCGGAGGAGCTAGTTGCCGAGGATGAAAATGTGAAACCAAAAGTTGTTGCAGAAGATATTCCACAAGAAAATATTCAAGATACCCTTCACTCGGTCCCGGTTGAGGCTGATGCTCAAATTTTGAATACAATTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGACGCCGAAAAAATTCCTCAGAGTAATAATGGGGTTGAGAATGATGATGCTGCATGTCAAAATGGTGATGGTGATCCTGAAATGACAACGGTGGAGGTTGAGGTGAAGCCTGAAGTTTGTGAAGCGGCTGATAGTAAAACTTGTGATAGTGAACCTATATCGTCAAGTCATTACAATGCCACTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGAACCTACTGCACCACAACCTGACCCTTCTGATACAAATGAAGCTATACTGTCAAGTCATAACGAACCTACTGCACCACAACCTCTCCCAGCTGATACAGTGCCAGAAATCAAGAATGTTTTAGAAGATGAAAGTAAGGCTGGTGAAGAGCAAGCTGCTGAGCCTGCAGATAATGGGATCCCAGATTCGCCGCAGAACATGTTTTTCTTGGATCCTGATCATTATTATGATGGTAATGAGTCAGGAACGGAAGAGGACCAAGCCGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGAGCATGGATTTCAAACCTCCCAAATTTTACGGAGAAGGACTTAATTGCCTTAAGTTATGGAGATCAGTGATGAGATTGGGAGGCTATGAAAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCACAACATAAAAGGTGGCGAGCTGAATGTGCCTATCGCTTCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGCTATAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAGCAGGCTATGCGAGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATACCGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATTTACTTAAACGCAAGAAACCATCTTATATGGATAACGCAGTCAAAGCAGCACGCAGTAAACCATCAAGACCACAGTTGGAAACAGCTGTGGTTGATATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAAATTGTTTCGAGATATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCCGCCGGACGTTTGGTCATAAGTGGTGAGCCAGAGCGTCCCAATAATCCTTGGGGTGTTACACCATTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAATTGTTTATTCGTGTCCCATTTGAACAGTCAGAATAG 1671 0.4351 MMIIDNLAGLDSYLDQEMHLEVQPVVVEETSMNVENVLNDVKIGKAEELVAEDENVKPKVVAEDIPQENIQDTLHSVPVEADAQILNTIEGEDASDVKVDAEKIPQSNNGVENDDAACQNGDGDPEMTTVEVEVKPEVCEAADSKTCDSEPISSSHYNATTPQPDPSDTNEPIPSSHNEPTAPQPDPSDTNEAILSSHNEPTAPQPLPADTVPEIKNVLEDESKAGEEQAAEPADNGIPDSPQNMFFLDPDHYYDGNESGTEEDQAAFMKELENFFRERSMDFKPPKFYGEGLNCLKLWRSVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVNVENQAIASGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNTVSVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSRPQLETAVVDIGPPADWVKVNVQKTKNCFEIYALVPGLLREEVRVQSDPAGRLVISGEPERPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFIRVPFEQSE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01436 556 CDD ACD_sHsps_p23-like 475 551 - -
Trre10g01436 556 SMART ARID_2 259 349 - -
Trre10g01436 556 MobiDBLite consensus disorder prediction 103 127 - -
Trre10g01436 556 MobiDBLite consensus disorder prediction 147 204 - -
Trre10g01436 556 MobiDBLite consensus disorder prediction 222 244 - -
Trre10g01436 556 Pfam Hsp20/alpha crystallin family 473 555 IPR002068 -
Trre10g01436 556 ProSiteProfiles ARID domain profile. 262 353 IPR001606 GO:0003677
Trre10g01436 556 CDD ARID 264 349 - -
Trre10g01436 556 Gene3D - 262 359 IPR036431 GO:0003677
Trre10g01436 556 Pfam ARID/BRIGHT DNA binding domain 265 349 IPR001606 GO:0003677
Trre10g01436 556 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 456 556 IPR002068 -
Trre10g01436 556 FunFam AT-rich interactive domain-containing protein 3 262 361 - -
Trre10g01436 556 Gene3D - 455 556 IPR008978 -
Trre10g01436 556 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 555 IPR045147 GO:0006357
Trre10g01436 556 FunFam AT-rich interactive domain-containing protein 3 448 556 - -
Trre10g01436 556 SUPERFAMILY HSP20-like chaperones 465 552 IPR008978 -
Trre10g01436 556 SMART bright_3 263 354 IPR001606 GO:0003677
Trre10g01436 556 SUPERFAMILY ARID-like 253 363 IPR036431 GO:0003677
Trre10g01436 556 MobiDBLite consensus disorder prediction 141 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01436 Trre-Chr10 12125636 12136347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01436 257 554 ARID Transcription Factor Family AT1G76510 61.716 1.34e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre10g01436 HSP20 1.2e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01436 - - psat:127119953 879.396