Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01435 ATGAGTGATACAAAAGAAAACGAAGAAGCTGGTGAGGGCGTTCCCGCGGCTGTTGGTGTGGAGGAAGCTGGGCATGTTGTTGTTGGCGAAAATGAAAGTTCAAACCAAGCTTCAACTAGTCCACAATTAAGAGATAATGATATGATGATTATTGATAATCTTGCTGGATTGGATTCGTACCTTGATCAAGAGATGCATCTTGAAGTTCAACCTGTTGTTGTAGAGGAAACTTCAATGAATGTTGAGAATGTGTTGAATGATGTTAAAATTGGCAAGGCGGAGGAGCTAGTTGCCGAGGATGAAAATGTGAAACCAAAAGTTGTTGCAGAAGATATTCCACAAGAAAATATTCAAGATACCCTTCACTCGGTCCCGGTTGAGGCTGATGCTCAAATTTTGAATACAATTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGACGCCGAAAAAATTCCTCAGAGTAATAATGGGGTTGAGAATGATGATGCTGCATGTCAAAATGGTGATGGTGATCCTGAAATGACAACGGTGGAGGTTGAGGTGAAGCCTGAAGTTTGTGAAGCGGCTGATAGTAAAACTTGTGATAGTGAACCTATATCGTCAAGTCATTACAATGCCACTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGAACCTACTGCACCACAACCTGACCCTTCTGATACAAATGAAGCTATACTGTCAAGTCATAACGAACCTACTGCACCACAACCTCTCCCAGCTGATACAGTGCCAGAAATCAAGAATGTTTTAGAAGATGAAAGTAAGGCTGGTGAAGAGCAAGCTGCTGAGCCTGCAGATAATGGGATCCCAGATTCGCCGCAGAACATGTTTTTCTTGGATCCTGATCATTATTATGATGGTAATGAGTCAGGAACGGAAGAGGACCAAGCCGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGAGCATGGATTTCAAACCTCCCAAATTTTACGGAGAAGGACTTAATTGCCTTAAGTTATGGAGATCAGTGATGAGATTGGGAGGCTATGAAAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCACAACATAAAAGGTGGCGAGCTGAATGTGCCTATCGCTTCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGCTATAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAGCAGGCTATGCGAGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATAGGAATACCGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATTTACTTAAACGCAAGAAACCATCTTATATGGATAACGCAGTCAAAGCAGCACGCAGTAAACCATCAAGACCACAGTTGGAAACAGCTGTGGTTGATATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAAATTGTTTCGAGATATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCCGCCGGACGTTTGGTCATAAGTGGTGAGCCAGAGCGTCCCAATAATCCTTGGGGTGTTACACCATTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAATTGTTTATTCGTGTCCCATTTGAACAGTCAGAATAG 1812 0.436 MSDTKENEEAGEGVPAAVGVEEAGHVVVGENESSNQASTSPQLRDNDMMIIDNLAGLDSYLDQEMHLEVQPVVVEETSMNVENVLNDVKIGKAEELVAEDENVKPKVVAEDIPQENIQDTLHSVPVEADAQILNTIEGEDASDVKVDAEKIPQSNNGVENDDAACQNGDGDPEMTTVEVEVKPEVCEAADSKTCDSEPISSSHYNATTPQPDPSDTNEPIPSSHNEPTAPQPDPSDTNEAILSSHNEPTAPQPLPADTVPEIKNVLEDESKAGEEQAAEPADNGIPDSPQNMFFLDPDHYYDGNESGTEEDQAAFMKELENFFRERSMDFKPPKFYGEGLNCLKLWRSVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVNVENQAIASGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNTVSVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSRPQLETAVVDIGPPADWVKVNVQKTKNCFEIYALVPGLLREEVRVQSDPAGRLVISGEPERPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFIRVPFEQSE 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01435 603 Gene3D - 502 603 IPR008978 -
Trre10g01435 603 SUPERFAMILY ARID-like 300 410 IPR036431 GO:0003677
Trre10g01435 603 SMART ARID_2 306 396 - -
Trre10g01435 603 MobiDBLite consensus disorder prediction 188 257 - -
Trre10g01435 603 FunFam AT-rich interactive domain-containing protein 3 309 408 - -
Trre10g01435 603 CDD ACD_sHsps_p23-like 522 598 - -
Trre10g01435 603 MobiDBLite consensus disorder prediction 1 44 - -
Trre10g01435 603 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 145 602 IPR045147 GO:0006357
Trre10g01435 603 MobiDBLite consensus disorder prediction 150 174 - -
Trre10g01435 603 SMART bright_3 310 401 IPR001606 GO:0003677
Trre10g01435 603 FunFam AT-rich interactive domain-containing protein 3 495 603 - -
Trre10g01435 603 MobiDBLite consensus disorder prediction 29 44 - -
Trre10g01435 603 SUPERFAMILY HSP20-like chaperones 512 599 IPR008978 -
Trre10g01435 603 MobiDBLite consensus disorder prediction 194 251 - -
Trre10g01435 603 Gene3D - 309 406 IPR036431 GO:0003677
Trre10g01435 603 ProSiteProfiles ARID domain profile. 309 400 IPR001606 GO:0003677
Trre10g01435 603 MobiDBLite consensus disorder prediction 269 291 - -
Trre10g01435 603 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 503 603 IPR002068 -
Trre10g01435 603 CDD ARID 311 396 - -
Trre10g01435 603 Pfam Hsp20/alpha crystallin family 520 602 IPR002068 -
Trre10g01435 603 Pfam ARID/BRIGHT DNA binding domain 312 396 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01435 Trre-Chr10 12125636 12136488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01435 304 601 ARID Transcription Factor Family AT1G76510 61.716 3.11e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre10g01435 HSP20 1.4e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01435 - - psat:127119953 910.598