Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01412 ATGCATCAAAGAGTTATAGGATTGAACCTAGAAGGACATCAGTTACATGGATCTTTAACTCCACATGTTGGTAATCTCACTTTAATGCAAAATCTCAACCTTGGAAACAACAGCTTCTATGGAGAAATCCCACCGGCGTTAGGTCAGTTGCTACAATTGCAAAATCTTTTCCTCACCAATAACTCTTTTGTAGGTAAAATTCCTACAAACTTGACATATTGCTCCAATCTCAAAGAGTTATTCTTGGAAGGGAACAATCTCATTGGTAAAGTACCAAATGAAATTGGCTCTTTGAAAAACCTTCAACAACTGACTGTTTGGAGAAACATTCTAACCGGAGGAATCCCTTCATTCATCGGGAATCTTTCATCCTTAACGCATGTTTCGTTTGCTGAGAACAACTTAGAAGGAGATATTCCACAAGCAATTTGTCGCCTCAAAAACCTGAAAATGTTACTAGTGGGTGGGAACATTTTGTCTGGTACCCCTCCTTCTTGTCTTTATAACATCACATCACTTACTTCACTTTACATGGCATTTAATATCTTTCATGGCCCTCTTCCCATCAACATGTTTCACACGCTCCCAAATATCCAAAAGTTCGGTATCTCAGAAAATCAATTTGCAGCTAGGCTTGTCTCAGCCATGGGCGGTACCTCTCATAAGAATACCAGTACAATTGGAATAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGGATGGGTTCTGAAGTGTCAACATGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACTGACCCATATATTGTATCAAGAGATGCTGGAGTTTCAATACAAGATGGAAAGAGTGAGAATCTTATTCCAAGTGTAGAGGAGTGTTTAGTTTCACTTTTTAAGATCGGACTTGTTTGTTCAATGGAATCACCAAAAGAAAGAATGAATATTGCGGATGTCACTAGAGAGCTTAGCATAATCAAAAAAGTCTTTCTCTCTGGTTTTCGCGCTCATAATAAGTAA 1014 0.3866 MHQRVIGLNLEGHQLHGSLTPHVGNLTLMQNLNLGNNSFYGEIPPALGQLLQLQNLFLTNNSFVGKIPTNLTYCSNLKELFLEGNNLIGKVPNEIGSLKNLQQLTVWRNILTGGIPSFIGNLSSLTHVSFAENNLEGDIPQAICRLKNLKMLLVGGNILSGTPPSCLYNITSLTSLYMAFNIFHGPLPINMFHTLPNIQKFGISENQFAARLVSAMGGTSHKNTSTIGIKGTVGYAPPEYGMGSEVSTCGDMYSFGILMLEMLTDPYIVSRDAGVSIQDGKSENLIPSVEECLVSLFKIGLVCSMESPKERMNIADVTRELSIIKKVFLSGFRAHNK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01412 337 Gene3D Transferase(Phosphotransferase) domain 1 196 330 - -
Trre10g01412 337 Gene3D Ribonuclease Inhibitor 1 118 IPR032675 -
Trre10g01412 337 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 220 322 - -
Trre10g01412 337 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 92 189 - -
Trre10g01412 337 Pfam Leucine Rich Repeat 76 98 IPR001611 GO:0005515
Trre10g01412 337 Pfam Protein tyrosine and serine/threonine kinase 225 321 IPR001245 GO:0004672|GO:0006468
Trre10g01412 337 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 2 91 - -
Trre10g01412 337 Pfam Leucine rich repeat 100 157 IPR001611 GO:0005515
Trre10g01412 337 Gene3D Ribonuclease Inhibitor 123 194 IPR032675 -
Trre10g01412 337 SUPERFAMILY L domain-like 3 218 - -
Trre10g01412 337 SUPERFAMILY Protein kinase-like (PK-like) 223 326 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01412 Trre-Chr10 11884358 11890111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01412 225 330 Receptor kinase-like Gene Family AT5G20480 38.017 5.39e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre10g01412 PK_Tyr_Ser-Thr 2.5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01412 - - mtr:112422020 248.054