Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01410 ATGACACGAGTGCTAAGAATTCTCAATTCCACGGCAAATCTCACCGCCGTCGCAGTTGTAGCGCCACCACCAGAAGCCGTAGCTTTGGAATCAGATTTCGTGGTGATTCTCGGAGCTTTACTCTGTGCTTTGATATGCGTTGTCGGACTAATCGCCGTCGCTCGTTGTGCTTGGCTCCGACGAGACTCCGGCGCCGGAAATTCTCCTCAACAAGCTCTAGCTAACAAAGGACTGAAAAAGAAGGTTCTTCAATCACTTCCGAAATTCGCATACGTTGATAGCAACCCTGGAAAATGGCTAGCAACAACAGAATGCGCGATTTGCTTGGCGGATTTTGTCGCCGGCGACGAGATCCGTGTTTTACCGCAGTGTGGACATGGATTCCACGTGGCGTGCATCGACACATGGCTTGGATCACACTCTTCTTGTCCTTCCTGTAGACAGATTCTGGCTGTAACAAGGTGTCAGAAGTGCGGCAGGTTTCCGGCGACCGGAGCTGAAACCGCCGCTACCAGCGCTGCGGTGAGTGAACCAGAGTTGAAATCTTTAGAAGAAGGCAATGTCGGTGCAAATAGTAATAATCATTGTAGTGGGGGTGTTAGTAGTAGTAATACCAGTGAGTTCTTGCCTTAA 633 0.4992 MTRVLRILNSTANLTAVAVVAPPPEAVALESDFVVILGALLCALICVVGLIAVARCAWLRRDSGAGNSPQQALANKGLKKKVLQSLPKFAYVDSNPGKWLATTECAICLADFVAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAETAATSAAVSEPELKSLEEGNVGANSNNHCSGGVSSSNTSEFLP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01410 210 SMART FANCL_C_2 101 158 - -
Trre10g01410 210 CDD RING-H2_EL5-like 104 147 - -
Trre10g01410 210 SMART ring_2 105 146 IPR001841 -
Trre10g01410 210 Pfam Ring finger domain 104 147 IPR001841 -
Trre10g01410 210 MobiDBLite consensus disorder prediction 175 210 - -
Trre10g01410 210 SUPERFAMILY RING/U-box 83 152 - -
Trre10g01410 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Trre10g01410 210 MobiDBLite consensus disorder prediction 186 210 - -
Trre10g01410 210 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Trre10g01410 210 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 26 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01410 Trre-Chr10 11844379 11845011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01410 1 158 C3H Transcription Factor Family AT1G76410 62.805 9.46e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01410 - - gmx:100787383 319.701