Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01402 ATGAAGCTTTACGTTTCAATCTTCTTCTTCTTCGCTGTATTCTTCATCTTCATCAAATCCACCTCCCAATCCCAACAACTCTCTCTTCTCCACAACGAAATCGGTTTCTCTCCTTCTTCTCTCGCTCTTCCGCCGTCGCCTTCGCCGTCACCGTCACCATCTGGTTCCAATTTATTGGACATAAAACCTGCTACGGCACTGGTTGCTGCCCTAGATGGTACTGTTTATTTGGTTGAAAGTTCTTCTGGGAGGATAATTTGGTCTTTTTCAACTGGATCCCCAATTTATCATTCTTCATCCAATACTCCTTCTTCTGGACTCATTGAATGTGGTGATGACTGGGAATTAATCTTTCATGATACCCATTTTGGCAAAACGAGACTCAAGGAATCTGTTGCTGATTATGTTGCTGTTACACCTATTGTGTCAAAAGACGGAGCTGTTATACTTGGATCCAAAAGGAGCACTGTATTTGAAGTCAATGCTAAAACTGGAAAGCTCCTTAGAAGCTATAGTGCCACTGATTTTCATAATGCTTCTACTACTGCAGTGTGGAGTAGTGACAAAGACAGTAAGAATGTTACTAACGGCTTCGGTGCAAATACTAAGGAGCTTGCTGATCCAGCAAAGCTCAATATACCCGAGTTCTTGCTCCAGATAGTTAGAACTGATTATTTTTTACAATCTGTGGGTCCTGGTTCAGGAATAGTATTGTGGACTATGTCAGTAGCTGAATTTGAGTCTGTATTGTTTTGCCAGCATAATGGAAGTCCTATTTTGGGGGCTTCACTTGATGCAGAAGGTGAGTTTGCCTCTGATGTTGACAGTGGCTTGGATTTCGCTATGCCGTATCCGTGTTCAGACAGAAAACTCAGAGAAGTCTATCGCCAGCGAAAGAATTTTCTTTTTGAACCTGCTATAATTGAAAGATTATCTGATGTTGGTGCTTATCAAGAGAACAGTATGCTCCCGATGCCGGATTCAAAACTGATGCTTCCACCACATCCTAATAGTGATAGATTCCTCCCCGGTCATGATGGTAATATGATGCTTCCTGGGTCTGGGCCAAATTCTTTGCTGCCAAAAATCAGCTTCTATGATAGTAATGATAATGCACCTGTGCTCCCTCAGCCTCGTATGGAGATCACTGCACCTTGGGAAGTTGATCCGAGCAGGGTGATTGAATTGTCAATATCATTATTGTTTGTAGTAATATCTGTGGCATTTCTTTTGATATTGTGCCGAAATCGATTTACAAATAGAATTACATCGAAGGTACGAATCAGTGACTCAGATTTGAAAAGCTCGCCTTCTAAGAAAAAGAGAGCGCGTAAGTCAGGAAAAAACAATGTCATTATTGACAAACAGGGTAATAATCTGTCTTCAATTGAGGAGAATATACAAATACATAAGGAAGCAGAAAATGAAGCACGGTTACCTTATAATAAAGTTAATGGGCGCATGATTGGTAAGCTGATTCTATCAAATGAACAAATTGCGAAGGGAAGTAATGGTACCATTGTCTTTGAGGGTATATATGAAGGTCGAGCAGTTGCTGTCAAACGTCTTGTTACGGCTCATCATGATAAAGCTCATAAGGAAATCCAAAATCTCATTGCTTCCGACCGTCATCCAAATATTGTTCGATGGCATGGCGTGGAATCTGATCACGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCGTTCAACTTGGATGATTTGATTACTGTTTGTTCAGATATGTCAGAGAATTCAGTGTTAAGCAACAATCCAGCTTTTGAATTTTTCAAAAAGGCCCAGATAGAGACACAGAGGGATGATATACAGTGTCTTTGGAAAGCAAATGGTTATCCATCTCCTCTTTTACTAAAGCTTATGAGGGAAGTGGTTTGTGGGCTTGCTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCCCAAAATGTTTTGATAATCAAGGAAAGATCATTATGTGCCAAGCTTTCTGATATGGGGATTAGTAAACAACTTCCTGAAGATATGTCTTCTTTAGGTCATAGTTCTACTGGCTGTGGCAGTTCGGGTTGGCAAGCGCCAGAGCAGCTTGTTCCGCAGGGACGTCAAACACGGGCTGTAGATTTGTTTAGTTTAGGTTGTGTCCTCTTTTTCTGTATGACAGCAGGAAGACATCCATTTGGAGAACGTCTTGAGCGTGATGTCAACATTGTTAAAAATAAAAAAGATCTTTTCTTAGTGGAGTTCTTTCCCGAAGCTGAGGATCTTATTTCTTCTTTATTAAACCCTGACCCCGATTTAAGGCCAAAGGCGATTGAAGTACTACACCATCCTCTGTTTTGGAGTTCTGAGATGAAACTTTCATTTCTTCGTGACGTTAGTGACAGGGTGGAACTTGAAGATAGAGAGACTAATTCTGTTCTTTTGAATGTATTAGAGAGCACTGCTCCAGTGGCTTTAGGTGGAAAATGGGACGAAAAAATGGAACCAGCTTTCCTTGCCAACATTGGTCGTTACAGACGATATAAATTTGACAGCGTCCGAGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTATAGGGAATTGCCTCTAGAAATTCAGGAACTGATAGGACTTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTTCCAAGGCTCTTGATTGAAGTTTACAAAGTTATCTGCAACTATTGCAAGGATGATGAATGTTTTCAAAGATATTTTAGAGACATTGATTAA 2751 0.4053 MKLYVSIFFFFAVFFIFIKSTSQSQQLSLLHNEIGFSPSSLALPPSPSPSPSPSGSNLLDIKPATALVAALDGTVYLVESSSGRIIWSFSTGSPIYHSSSNTPSSGLIECGDDWELIFHDTHFGKTRLKESVADYVAVTPIVSKDGAVILGSKRSTVFEVNAKTGKLLRSYSATDFHNASTTAVWSSDKDSKNVTNGFGANTKELADPAKLNIPEFLLQIVRTDYFLQSVGPGSGIVLWTMSVAEFESVLFCQHNGSPILGASLDAEGEFASDVDSGLDFAMPYPCSDRKLREVYRQRKNFLFEPAIIERLSDVGAYQENSMLPMPDSKLMLPPHPNSDRFLPGHDGNMMLPGSGPNSLLPKISFYDSNDNAPVLPQPRMEITAPWEVDPSRVIELSISLLFVVISVAFLLILCRNRFTNRITSKVRISDSDLKSSPSKKKRARKSGKNNVIIDKQGNNLSSIEENIQIHKEAENEARLPYNKVNGRMIGKLILSNEQIAKGSNGTIVFEGIYEGRAVAVKRLVTAHHDKAHKEIQNLIASDRHPNIVRWHGVESDHDFVYLALERCAFNLDDLITVCSDMSENSVLSNNPAFEFFKKAQIETQRDDIQCLWKANGYPSPLLLKLMREVVCGLAHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKQLPEDMSSLGHSSTGCGSSGWQAPEQLVPQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNKKDLFLVEFFPEAEDLISSLLNPDPDLRPKAIEVLHHPLFWSSEMKLSFLRDVSDRVELEDRETNSVLLNVLESTAPVALGGKWDEKMEPAFLANIGRYRRYKFDSVRDLLRVMRNKLNHYRELPLEIQELIGLVPEGFNDYFASRFPRLLIEVYKVICNYCKDDECFQRYFRDID 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01402 916 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 485 565 - -
Trre10g01402 916 CDD RNase_Ire1 784 912 - -
Trre10g01402 916 PANTHER IRE1-RELATED 129 914 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre10g01402 916 SMART ire1_9 59 90 IPR018391 -
Trre10g01402 916 SMART ire1_9 140 172 IPR018391 -
Trre10g01402 916 Gene3D Phosphorylase Kinase; domain 1 481 565 - -
Trre10g01402 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Trre10g01402 916 SMART PGNneu 845 899 - -
Trre10g01402 916 ProSiteProfiles KEN domain profile. 783 914 IPR010513 GO:0004540|GO:0006397
Trre10g01402 916 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 50 240 IPR011047 -
Trre10g01402 916 Pfam Ribonuclease 2-5A 786 912 IPR010513 GO:0004540|GO:0006397
Trre10g01402 916 SUPERFAMILY Protein kinase-like (PK-like) 497 801 IPR011009 -
Trre10g01402 916 ProSiteProfiles Protein kinase domain profile. 493 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01402 916 Gene3D KEN domain 783 915 IPR038357 -
Trre10g01402 916 Pfam Protein kinase domain 497 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01402 916 Gene3D - 52 269 IPR015943 GO:0005515
Trre10g01402 916 MobiDBLite consensus disorder prediction 429 450 - -
Trre10g01402 916 Gene3D Transferase(Phosphotransferase) domain 1 609 782 - -
Trre10g01402 916 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 603 782 - -
Trre10g01402 916 SMART serkin_6 493 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01402 916 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 784 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01402 Trre-Chr10 11581040 11587287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01402 519 779 MAP Kinase Kinase Kinase AT3G06030 27.547 3.84e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre10g01402 Pkinase 3.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01402 K08852 - gmx:100785363 1080.86