Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01398 ATGGTTAAAGTTTGGTTATTGGCTCTAATGATTCTCTGCAATGGCTTCTCTTCAACTGTGGATGGCATTCATAATTCAACAAGGCCTGATTTTGTAAATATTGGAGCTCTTTTCTCTTTCAATACTAGTGTTGGTAGGATTATAAAAATCGCTTTAGATGCTGCGGTCGAAGATGTAAATTCTGATCCAAATATTCTCGGCGACACCAAGTTAAGGCTCTCTCTTCAAGAAGATTCTAAATATAGAGGTTTTCTTAGCATTGCTGAGGTTTTGCAGCTCATGGCTAGAGATACTGTGGCAATAATTGGCCCTCACAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTTATCTCATTTTCAGCTTTGGACCCTACTCTTTCTTCACTTCAATTCCCATTTTTTATCAGAACATGCCACAGTGATCTTTTTCAAATGGCTGCAATAGCAGACCTTGTCGACTACTACGGATGGAAAGAAGTCATTGCTGTATACATTGATGATGATAATGGGAGGAACGGAATCAGTGCATTAGGCGATAAGCTTGCCGAGAAGCGTTGCAGGATCTCGTATAAAGCGCCTGTGAGTCCCGAAGCAACTCCGGAGGAGATAACAAATGTGCTAGTTCAAGTGGCTCTTGCTGAATCAAGAGTTATAGTTGTTCATGCCAACACTCTTTGGGGCCCGAAAGTGTTTACTGTCGCAAAGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAGCAGTCCTCTATCTTATGATAGAATGGATGAAATCCAAGGAGTGTTGACACCGCGCGTGTACACGCCGGATTCGGAGCTTAAAAGAAAGTTTGTTTCTAAATGGAAAAACTTGACTCGTGGAAATACTGCCAATGGCCGTCTTGGACTCAGTTTTTTGTCTCTCTATGCATATGATACTATTTATGCTCTTGCTCATGCACTAGATGCATTTTTCAAGCAAGGGAACAAAATCACATTCTCAAATGACTCAAAGTTATCTTCACTAAAAGGAGACAACTTGCATCTTGATGCATTGAATGTTTTCGATCAAGGAAACTCGTTACGTAGATATATTTACGAGGTTAACATGACAGGTGTGACAGGTTTGTTCAAGTATGCACCTGATAAAAACCTTGTTAATCCTGCATATGAAATCATGAATGTGGTTGGAACCGGGACTCGAAGGATCGGTTATTGGTCTAATCACTCTGGATTATCAGTCATTCCTCCAGAAATACTTCTTTCCAAACCAGGTAATGATTTTAGGGAAAGTAAAAAGTTATACCCTGTGATTTGGCCGGGAGACAATGATCAGAAGCCTCGCGGTTGGGTTTTTCCCAACAATGGAAGGCTATTAAGAATTGGAGTACCAATAGGCGTTAGTTACCGCCAATTTGTGTCACAAGTACCAGGCACCGATACATTTCAAGGATTCTGCATTGATGTGTTTCTTTCTGCAGTTAACCTTTTGCCTTATGCTGTTCCCTATAAGTTTATTCCATATGGGGATGGTAAGAACAATCCTAGTAACACCGAGCTTGTCCGTCGGATAACAACCGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAAATGGTGGATTTTACTCAGCCATTTGTTGAGTCTGGTTTAGTTGTAGTAGCACCTGTTAAGGAGACAGATACAAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGTTTGTCACAGCTGTATTTTTCATAATAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCTAGAAAACAAGTGATTACTATCTTTTGGTTTAGCTTTTCAACAATGTTCTTCTCACATAGGGAAAATACAGTGAGCACGCCTGGTCGTTGTGTGCTACTTATATGGTTATTTGTAGTTCTTATAATCACTTCAAGTTACACTGCAAGTCTAACATCAATCCTCACAGTACAGCAACTTTCTTCACCCATTAAAGGCATTGAAAGTTTAGTAATCGGCAAAGAACCAATTGGAATCGCTCAAGGTTCATTTTCTAAAGGTTATTTAATCCAAGAAATTGGTATTGATGAGTCTAGGCTTGTTCCTTTAGTAACACAAGAAGAAGTTTCTAGAGCACTGAAAAAGGGTCCTCAAGATGGTGGTATTGCTGCTTATATCGATCAGCGTGCCTATATCGATATCTTTCTTTCAAGCCGCTGTCAATTTACTGTTGTAGGTCAAGAGTTCACCCGAAATGGTTGGGGATTCGCCTTTCCAAGAGACTCACCATTAGCAGTAGACCTATCAACTGCCATTTTGCAAATGGTAGACAATGGAGACTTACAAAGGATTCATGACAAATGGCTTTTGAGTCGAGCTTGTTTATCACAAGGTGCAAAGCTTGAAGTCGAAAGACTCAAACTAAAAAGCTTTTGGGGCCTCTATGTGATATGCGGATCAGCTTGTTTGCTTGCTTTATTCATATATGTAATACAGATAATTAGACAGTATATCAAGCACCGAGCAGAGGAACCTGATTCTCCCGACCAAAACCCGAGCTCAGGATCTTCACGTTTGAGGAGTTTCCTTTCCTTTGCAGATGAAAAAGAAGAGACTGTTAAGAGCCGTTTGAAGAGAAAGAAAATGGAAAGAATCTCTTATAGAAGTAGTGAGGGAGGATCATCTTCTATCATCTCCAATAAAGATTATGTTGCTCAGCCATCTCCATGCATAGCTGATTCTGTTTCTAATAGTGGAAGTGAAAAAGTATTCATCAAAGTGGTGTAA 2856 0.3995 MVKVWLLALMILCNGFSSTVDGIHNSTRPDFVNIGALFSFNTSVGRIIKIALDAAVEDVNSDPNILGDTKLRLSLQEDSKYRGFLSIAEVLQLMARDTVAIIGPHSSVTAHVITHIANELQVPLISFSALDPTLSSLQFPFFIRTCHSDLFQMAAIADLVDYYGWKEVIAVYIDDDNGRNGISALGDKLAEKRCRISYKAPVSPEATPEEITNVLVQVALAESRVIVVHANTLWGPKVFTVAKNLGMMGTGYVWIATAFLSAILDISSPLSYDRMDEIQGVLTPRVYTPDSELKRKFVSKWKNLTRGNTANGRLGLSFLSLYAYDTIYALAHALDAFFKQGNKITFSNDSKLSSLKGDNLHLDALNVFDQGNSLRRYIYEVNMTGVTGLFKYAPDKNLVNPAYEIMNVVGTGTRRIGYWSNHSGLSVIPPEILLSKPGNDFRESKKLYPVIWPGDNDQKPRGWVFPNNGRLLRIGVPIGVSYRQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSNTELVRRITTGEFDGAVGDIAITTERTKMVDFTQPFVESGLVVVAPVKETDTSALAFLAPFTPRMWFVTAVFFIIVGTVVWILEHRVNDEFRGPPRKQVITIFWFSFSTMFFSHRENTVSTPGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVIGKEPIGIAQGSFSKGYLIQEIGIDESRLVPLVTQEEVSRALKKGPQDGGIAAYIDQRAYIDIFLSSRCQFTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMVDNGDLQRIHDKWLLSRACLSQGAKLEVERLKLKSFWGLYVICGSACLLALFIYVIQIIRQYIKHRAEEPDSPDQNPSSGSSRLRSFLSFADEKEETVKSRLKRKKMERISYRSSEGGSSSIISNKDYVAQPSPCIADSVSNSGSEKVFIKVV 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01398 951 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Trre10g01398 951 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Trre10g01398 951 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Trre10g01398 951 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Trre10g01398 951 Gene3D - 778 811 - -
Trre10g01398 951 Gene3D - 148 425 - -
Trre10g01398 951 Gene3D - 729 777 - -
Trre10g01398 951 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Trre10g01398 951 CDD GluR_Plant 472 812 - -
Trre10g01398 951 Gene3D - 467 583 - -
Trre10g01398 951 FunFam Glutamate receptor 583 713 - -
Trre10g01398 951 Pfam Bacterial extracellular solute-binding proteins, family 3 483 812 IPR001638 -
Trre10g01398 951 FunFam Glutamate receptor 148 305 - -
Trre10g01398 951 Gene3D - 50 400 - -
Trre10g01398 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 877 IPR015683 -
Trre10g01398 951 FunFam Glutamate receptor 709 816 - -
Trre10g01398 951 SUPERFAMILY Periplasmic binding protein-like II 452 814 - -
Trre10g01398 951 PIRSF IGluLR_plant 1 941 IPR017103 -
Trre10g01398 951 FunFam Glutamate receptor 467 583 - -
Trre10g01398 951 Gene3D - 584 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01398 Trre-Chr10 11563513 11566946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01398 5 913 Ion Channels AT3G51480 58.662 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01398 K05387 - gmx:100785258 1490.71