Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01397 ATGGAGGATCAAAATGATGATACCTTGGGGAATTTGAATCAGAATATTGTTGGCAAACCTCCAAGGGATCATTCTGTTGCTATGCGTCATTGTACCAGCTCTTCATGGTTGGCTGATTCGGAATCAAATATTAATGTTATTGGCCTTAAATCAAACACAGAAGATAAATCAGAGTTTCCACTTATATTGAGATCTGGAAGCAGTTCTGAGAAAGGACCAAAGCAATTCATGGAGGATGAATTTATATGTGTTGATATTCTTCGCGAATCTGTTCCTCAACAACCTGACCTACCATCTCCATCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGATGCAGCATCATTTATCAAAAAAACCCTCCTTAACTTTATAATTGAAGATTCTCAATTTCCATCTAGCATTAAGAAAGCAGTTAAGAGTGCATTTGTGAAAGCTGATCATGCATTTAGAGATGCCAGTTCTCTTGATAACTCTTCAGGAACCACAGCTCTAATAGCCCTTGTTTTGGGAAGGGCCATGCTGATTGCGAACGCCGGAGATTCGCGTGCAGTACTAGGAAAACGAGGACGAGCAATTGAACTGTCTAAAGACCATAAACCAAACTGCACATCAGAAAGATTAAGAATTGAAAAACTAGGCGGTGTTATCTATGACGGATACCTAAATGGACAACTATCTGTGGCGCGTGCACTAGGAGATTGGCACATAAAAGGCACAAAAGGTTCAAAAAGTCCTTTAAGCTGTGAACCAGAGTTAGAGGAAATTGTTCTAACGGAAGAAGACGAGTTTTTGATAATGGGATGTGATGGATTATGGGATGTTATGAGTAGTCAATGTGCTGTTACAATGGTTAGAAGGGAACTTATGCAGCATAATGATCCTAACATATGTGCTAAGGTACTTGTAACTGAGGCACTTCAAAGAAACACTTGTGATAATTTAACAGTTGTTGTGGTTTGTTTCTCTAAAGATCCACCTCCTAAGATTGAAATTCCTAGATCACATAGGAGAAGGAGTATTTCTGCTGAAGGTCTTGACCTACTCAAAGGTGTGTTGAATGGTAGATGA 1077 0.3937 MEDQNDDTLGNLNQNIVGKPPRDHSVAMRHCTSSSWLADSESNINVIGLKSNTEDKSEFPLILRSGSSSEKGPKQFMEDEFICVDILRESVPQQPDLPSPSAFYGVFDGHGGVDAASFIKKTLLNFIIEDSQFPSSIKKAVKSAFVKADHAFRDASSLDNSSGTTALIALVLGRAMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGTKGSKSPLSCEPELEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPNICAKVLVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLNGR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01397 358 PANTHER PROTEIN PHOSPHATASE 2C 54 322 IPR015655 GO:0004722|GO:0006470
Trre10g01397 358 SMART PP2C_4 54 322 IPR001932 -
Trre10g01397 358 MobiDBLite consensus disorder prediction 1 26 - -
Trre10g01397 358 SUPERFAMILY PP2C-like 58 325 IPR036457 -
Trre10g01397 358 CDD PP2Cc 64 324 IPR001932 -
Trre10g01397 358 Pfam Protein phosphatase 2C 65 316 IPR001932 -
Trre10g01397 358 Gene3D - 48 328 IPR036457 -
Trre10g01397 358 FunFam Probable protein phosphatase 2C 22 49 327 - -
Trre10g01397 358 ProSitePatterns PPM-type phosphatase domain signature. 103 111 IPR000222 GO:0043169
Trre10g01397 358 ProSiteProfiles PPM-type phosphatase domain profile. 64 324 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01397 Trre-Chr10 11555688 11557558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01397 47 356 PP2C-type Phosphatase Gene Family AT3G51470 78.387 1.93e-178 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01397 K14803 - gmx:100786416 590.112