Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01394 ATGATGGATGATTTTAGAAAAACATTGAAGGAAGTTAATTATGATTCGAAGGATGGTAAAAGGGTTAGTAAAGAGATTGGTGAGAAGTGGTGGTCCATGACTGATGCAGAGAAAAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATATGAGAAGGCTATGGAAATCTATAATGCTACTAAAAAGGAAGATCAACAAGAGGGTTATGACAAGTCTAATAAGGAAGCCACTGCAGTACCGACGAGGCAAGAAATAGTAACTTTACAAGGTTCAGAGCTGCTTCCTTTTCAGAATATTGATCTATATGTTCTCTCTTCCCATTTTGTAATTTATGTAGAGAAAGTGCTATAG 357 0.3613 MMDDFRKTLKEVNYDSKDGKRVSKEIGEKWWSMTDAEKKPYLDRVIELKAEYEKAMEIYNATKKEDQQEGYDKSNKEATAVPTRQEIVTLQGSELLPFQNIDLYVLSSHFVIYVEKVL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01394 118 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 78 IPR031061 -
Trre10g01394 118 Coils Coil 45 69 - -
Trre10g01394 118 SMART hmgende2 2 61 IPR009071 -
Trre10g01394 118 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1 60 IPR009071 -
Trre10g01394 118 Gene3D High mobility group box domain 2 83 IPR036910 -
Trre10g01394 118 SUPERFAMILY HMG-box 6 72 IPR036910 -
Trre10g01394 118 Pfam HMG (high mobility group) box 2 60 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01394 Trre-Chr10 11541301 11542350 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre10g01394 HMG_box 3.8e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01394 K25507 - gmx:100810345 106.686