Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01389 ATGTCTTGTTCTTCTTCATCTGGATCGGAAGAAGATGATGAGGGCTTTGAGTCCTATCGGAAAGGTGGTTACCATGCTGTTAGAGTCGCCGATCATTTCTCCGGTGGAAGATATATAGCTCAGAGGAAACTTGGTTGGGGTCAATTTTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATATGTTGCTCTCAAAATCCAGAAAAGTGCGACTGAGTTTGTTCAGGCTGCCCTTCACGAGATAGATGTTCTTTCATCTATTGCTGATGGCGACCCATCAAATTCAAAGTTTGTTGTCCAATTGATTGATCACTTTAAGCACACAGGTCCAAATGGACAACACCAATGCATGGTCCTTGAATTCCTTGGTGATAGCTTGCTTCGATTGATCAGATATAACCATTACAAAGGTCTTCCGTTGAATAAAGTTAGAGAGATCTGCAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGACCTTGGTATAATCCACACTGACTTAAAACCTGAAAACATTCTTCTACTTTCAACTATTGATCAATCCAAAGACCCTTTTAGATCCGGAGGCTCCCCAATTTTAGAACGACCTGAGGGAAACACAAACGGTGGAATTACGAGTCTTATTGAGAAAAGGTTGAAGAGGAGAGCAAGGAGTGCGGTTGCTAAAATATCAGGTAGAACATCTTCAATTGAAGGACGAGGAGAAGCTGCAAAGTCTAGTAGAAATATCAACGGGATTGACATGAGATGCAAGATTGTTGATTTTGGAAATGCATGTTGGGCTGATAAGAAGTTTGCAGAAGAAATACAGACGAGACAGTATAGAGCCCCTGAAGTTATACTGAAGTCCGGTTATTCCTTCTCCGTTGACATGTGGTCTTTTGCTAGCATTGTTTTTGAACTTGCCACTGGAGACATGTTATTTACACCGAAAGGTGGACAAGGTTTTAGCGAGGATGAGGATCATCTTGCCCTGATGATGGAACTCCTAGGAAAGATGCCTCGGAAGATTGCTACTTCTGGAGCTATGTCCAAAGATTACTTTGACAGGCATGGTGATCTAAAAAGGATTAGAAGGCTAAAATATTTGCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCATGATTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCACCAGAAAAACGACCAACTGCACGACAATGCCTGCAACACCCCTGGCTGAACTGCAAGGAATCAACAACACCAAATGAAATGATAAATGAATCCACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTAAAATCAAGGTAGGAAAGTGA 1341 0.4072 MSCSSSSGSEEDDEGFESYRKGGYHAVRVADHFSGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSATEFVQAALHEIDVLSSIADGDPSNSKFVVQLIDHFKHTGPNGQHQCMVLEFLGDSLLRLIRYNHYKGLPLNKVREICKYILIGLDYLHSDLGIIHTDLKPENILLLSTIDQSKDPFRSGGSPILERPEGNTNGGITSLIEKRLKRRARSAVAKISGRTSSIEGRGEAAKSSRNINGIDMRCKIVDFGNACWADKKFAEEIQTRQYRAPEVILKSGYSFSVDMWSFASIVFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIATSGAMSKDYFDRHGDLKRIRRLKYLPLDKLLIDRYKFSANDAHDFSEFLLPLFDFAPEKRPTARQCLQHPWLNCKESTTPNEMINESTVEKVNVGMSNLKIKVGK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01389 446 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 225 420 - -
Trre10g01389 446 SUPERFAMILY Protein kinase-like (PK-like) 33 415 IPR011009 -
Trre10g01389 446 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Trre10g01389 446 CDD STKc_SRPK 27 413 - -
Trre10g01389 446 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01389 446 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01389 446 FunFam Protein kinase superfamily protein 24 123 - -
Trre10g01389 446 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01389 446 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Trre10g01389 446 FunFam Serine/threonine-protein kinase SRPK 115 413 - -
Trre10g01389 446 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01389 446 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Trre10g01389 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01389 Trre-Chr10 11497276 11500443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01389 4 414 EF-hand Containing Proteins AT5G22840 50.756 1.30e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre10g01389 Pkinase 3.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01389 K08832 - gmx:100784192 766.533