Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01386 ATGGGAGGCTTATTACACTTTTTTGAATTCAATCAAGGGAGGATGGCTAAGAAGGTCCATGCTCACAAGAGACATCATCATGTTGATTCTGAAACTCCTCGAAATAGTCTAGATCTGCAAGAAGAAACATCTCAGAAGTACGGTCCACAAGGAGAATTACCGCACTATTATCAAGTAGAAGATGACTGGTCTGAAAATAATCGATATTCAAACGCGGGTTCTATGAAAAAGCTGATTAATGAAGAGCTATCGACACGATCAAGCACCAGACAAAATGCACCAAGCATTGTGGCAAGGTTGATGGGGATAGATATGATGCCGGTAGACACTAAATATGTCGCTCCATCGGATAAAAAAATAAATGAAAATATCGGGAAGAAGTTTTCAAACAAGGGAACAAATGAAAGGAGTTCAGTTAGTTTGGAATGTTCCAACTTTAATTCTTCTAGCCATGTTGAATTTGATTCATTTCACAAAGTCGTAGAGGATGACAATGATGATGGATGGGGTCGGAGTTTTGGAAAACCAACGCGACGAGAACATCCACAGGAAGAAGAACTGCAGAAATTTAAGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTTCAGGAATGTTCAAAGTTCGCTGAAATCGGAAGTGTTTCTAACCGATTGATTTTTGAAGAGAACCTGAACAAGGAAAAGGTTGCAGTTGCAGCGCATAATACAAGTATGCAAAGAAAAGTTTTTCCTTCAAAGAGCAGAACTCTAAGTAGAGACTTTGAAGATTCCTTAATGTTGAAATCTTATAACAGATTAGACACGTCTTCTCCAACCCGAATAGTTATCTTGAAGCCTGGTCCTGATAGCATCTTTAATCATGAAGAGAATTGGACCAATTCATCGGGAACTTTACAAGGGAGACATAGTATAGAAGATTTTCTCGAGGAGGTGAAAGAGCGGTTGAAATGTGAACTCCAAGGAAAAACTGTCGGAAAAGGTTTTGCGGTCCGAGGAAATGAAATTGAGATACTACGCAATAAAAAACCATCTGATCCTAAACTTATCGCTCGTCAAATAGTAAAGCAAGTCAAAGAAAATGTGACTAGAGATTCTGACTCAAATTCGGTCGGCTCAGAATCAACAAGATCATACAATGGTGAAATGCAGTTCAATGGACCAAGTTTCAACGGATATATCAGTAGAGATTCAAGGAGTTACTTGTCAGAGAAGCTAACAAATGTTGTAAAAAGTGAAAGACATGATGATTTTGAGGCGAACTCGAGATCAAATGCATTTGAAAATGACAGAGTTAGACTCAAGAAGACAGAAGATGTTTTGAAAAGTGCAAATGATTGGGAAATATCAAAAGAAGAAACAGAAATACAAACAGGATCTTTCAGGCATGAACAAGATAACAACATATTTTTCCACAGGGAGTTATGGTCTCCAAGGAACCTTGTAAGGTCCTTTTCTGCTCCTGTATCAAGATCAGGAACATCATTTGGAAAGCTTCTTCTAGAGGACCGACACATTTTAACCGGTGCTCATATTCGAAGGAAGCTTGAAGCTGTTGAAACTATGTCTGTTGATGTTAAAAAACAGAAAAAAGAGAGGTTTAATAATATTAAAGAAAAGGTCTCCAATTTTAGATACAGTTTTGCTCTAAGAGGGAGGATTTTTGGCAAGAGGAATCAATCAATGGTAGAATCACATGGCAATGAATACCGTCCAACAATGAGAGATATCACAAGTGGTCCGACAGTTCTTATGAACTGCGGCGGCGAGAGACATGAGAACTACACTGAGGTACCTCCTAGTCCTGCATCTGTGTGCAGCAGTGTTCATGAAGACTTTTGGAAGCGAGCCGAATATATAAGTCCAATATCAACTCCTGATTTGTCGTCAAGAGATGATACCGTTATGCCACAAGTTTTCAGAGACATCAGCTCTGGTTTAAATGAGCTAAGAAGACAACTGAATCAACTCGATTCTGATGATGTTGAGGACTTCACTATGAAACAAGAACCTTCTGAGTCTGAATTTGTGCAATTAAATGATCCTGCAGAATCTTACATAAGAGATTTACTTGTTGCTTCTGGTCTATACTTTGGTTCTTGGGATAAACCTTTGTTAAGAGGCGACACATATGCAAAGCCTATCGGAAATTCTGTTTTTGAAGAAGTGGAAGAATCTCATAAGAAATTGATCAAAGAGAATGATGAAAATTTTATCAAGAATCATAAGCTAGACCACAGGATTTTGCTTGATTTGTTAAACGAGTCGCTTTCAATTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAAGAAAAAATCATGCAACTCTTCAATGCTAGCGCTGCCTCAAGGAAAGGAACTATTGAAATTAGTATGGGACAATATCCGCGTTTCGTTGTATCCATCATCTGATATATCTCATTATTCACTCGATACTTTGGTGTCTCAACACTTGAGTTCAATACCTTGGTCCGGCATAATCAACGACGAGATCAATATATTGGAAAGAGAGATAGAATGTCGTATAACTAATGATCTTGTCGAAGAACTCACAAAGGATTTGCTCTGA 2568 0.3828 MGGLLHFFEFNQGRMAKKVHAHKRHHHVDSETPRNSLDLQEETSQKYGPQGELPHYYQVEDDWSENNRYSNAGSMKKLINEELSTRSSTRQNAPSIVARLMGIDMMPVDTKYVAPSDKKINENIGKKFSNKGTNERSSVSLECSNFNSSSHVEFDSFHKVVEDDNDDGWGRSFGKPTRREHPQEEELQKFKKEFEAYQAARFQECSKFAEIGSVSNRLIFEENLNKEKVAVAAHNTSMQRKVFPSKSRTLSRDFEDSLMLKSYNRLDTSSPTRIVILKPGPDSIFNHEENWTNSSGTLQGRHSIEDFLEEVKERLKCELQGKTVGKGFAVRGNEIEILRNKKPSDPKLIARQIVKQVKENVTRDSDSNSVGSESTRSYNGEMQFNGPSFNGYISRDSRSYLSEKLTNVVKSERHDDFEANSRSNAFENDRVRLKKTEDVLKSANDWEISKEETEIQTGSFRHEQDNNIFFHRELWSPRNLVRSFSAPVSRSGTSFGKLLLEDRHILTGAHIRRKLEAVETMSVDVKKQKKERFNNIKEKVSNFRYSFALRGRIFGKRNQSMVESHGNEYRPTMRDITSGPTVLMNCGGERHENYTEVPPSPASVCSSVHEDFWKRAEYISPISTPDLSSRDDTVMPQVFRDISSGLNELRRQLNQLDSDDVEDFTMKQEPSESEFVQLNDPAESYIRDLLVASGLYFGSWDKPLLRGDTYAKPIGNSVFEEVEESHKKLIKENDENFIKNHKLDHRILLDLLNESLSIVLGPPLTLSRFKKKSCNSSMLALPQGKELLKLVWDNIRVSLYPSSDISHYSLDTLVSQHLSSIPWSGIINDEINILEREIECRITNDLVEELTKDLL 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01386 855 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 854 - -
Trre10g01386 855 MobiDBLite consensus disorder prediction 363 383 - -
Trre10g01386 855 Pfam DUF761-associated sequence motif 91 107 IPR032795 -
Trre10g01386 855 MobiDBLite consensus disorder prediction 18 53 - -
Trre10g01386 855 Pfam Domain of unknown function (DUF4378) 684 849 IPR025486 -
Trre10g01386 855 MobiDBLite consensus disorder prediction 360 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01386 Trre-Chr10 11480424 11483663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01386 75 854 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 40.491 1.46e-149 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01386 - - gmx:100789616 1187.56