Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01384 ATGTATCTATTCAACTTAGAGGATTTGGGAGTTAGGTTTTCGGCTTCTATTCTACTGTTGCTGATCAATCAATCTACTGTTGTGGTTATCTTATTTTCTGATTTTTCATTTCTGATTTTTGATCTAGCAAAGGAAGCTAGTTTGCAAGAAACATTTGAGTTCAAAGGACACCTGAGGAGATGGAGTTTGACCGGATGCTTGATGATTTCAGCCCTTGGTTTGTTGAGTGGTGGGGAACAGGAGTACTTCCTGTTGATGCGGATTTGCTCCCCCCCTGCAGTTCCTGATTACAGAACACCTGTTAGGCTTCTTCCTGCCAAAATGCATCCAAATCTTCAAGGTCTGGCATATGCCATTCTTAAGCTGTGGGAGAAAAGTTTGGTCGCAAAGATTGCTGTCAAGTTTGGTGTCCAGAATACGAACAATGAACTGATGGCTCTGGAACTGAAGGTCCAGGAGTTACCTTCCGTTTTTATAACTTTTCTTGCATGGGGCATAGCTGAGGTGATTTTTTTCATATTCACCGATAATATGGTTGATGTACCAGGGCCTTCCATTTATGAAGAAAGTCTATCTATTACGATTTCTTTAAGGTCGAACTTGCAGTTTATCCATCTGCCTGACTGCCACTATACCTGCATATATGACAAACTGAGTACTACTCTGGCAAAGATAAAGACAACTCTTCTAAGAATCTTTGCATTTAAGGAATGTAATTTTCTTTATTCCAAGGACCTGTTTTTGCTTTGTGTTACAGGGGAGAGAGCTATTAATGTACGGTGGGATTTGAAAGCTTTGAGCCTTTGGATTCAACAGTGGAATTATCTACCAATGTTATGTGGGATAAATCAGGAAACTGAGTACAAGGAGGGGAAAAAAATAATTGAATGTGCAGCTACGTCAGAGATTATAATTGGTTTGAGGAGAGGATATGATTTTGATTTACATCTTAATATGTTTTTCCCAGAATTTCGCACAATCAAACTTCTCTGGACCCTTCTTTTACTCATCAAGATTCTGTTTTGTTTGCTTATTGGATTACTTATAGACTCGGGTAATGGTGTCACTCATGTGGTTCCAGTTGTTGATGGCTATTCATTCCCTTATCTGACGAAACGGATGAATGGGATTGAGACCACTATCTTTGTTAAAAATTATACTCTTCCTGATGGAAGGGTCATTAAAGTAGGGACAGAAAGGTTCCAGGCCCATGAGGCTCTTTTCACACCGTTAGATGTTGAAGGTGATGGAATGGCTGACATGGTGTTTCGCTGCATTCAAGAAATGGATATCGACAACCGGATGATGCTTTATCAACACATTGTTTTAAGTGGAGGGAGCACCATGTATCCTGGATTACCTAGCCGTGAGCTGAGAAGTCTTGATAGTTAG 1392 0.4009 MYLFNLEDLGVRFSASILLLLINQSTVVVILFSDFSFLIFDLAKEASLQETFEFKGHLRRWSLTGCLMISALGLLSGGEQEYFLLMRICSPPAVPDYRTPVRLLPAKMHPNLQGLAYAILKLWEKSLVAKIAVKFGVQNTNNELMALELKVQELPSVFITFLAWGIAEVIFFIFTDNMVDVPGPSIYEESLSITISLRSNLQFIHLPDCHYTCIYDKLSTTLAKIKTTLLRIFAFKECNFLYSKDLFLLCVTGERAINVRWDLKALSLWIQQWNYLPMLCGINQETEYKEGKKIIECAATSEIIIGLRRGYDFDLHLNMFFPEFRTIKLLWTLLLLIKILFCLLIGLLIDSGNGVTHVVPVVDGYSFPYLTKRMNGIETTIFVKNYTLPDGRVIKVGTERFQAHEALFTPLDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRELRSLDS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01384 463 PANTHER ACTIN 381 456 IPR004000 -
Trre10g01384 463 SMART actin_3 128 463 IPR004000 -
Trre10g01384 463 Gene3D Actin; Chain A, domain 4 382 415 - -
Trre10g01384 463 Gene3D - 342 381 - -
Trre10g01384 463 SUPERFAMILY Actin-like ATPase domain 346 460 IPR043129 -
Trre10g01384 463 Pfam Actin 378 456 IPR004000 -
Trre10g01384 463 Gene3D - 416 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01384 Trre-Chr10 11446419 11458658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01384 346 456 Cytoskeleton Gene Families AT5G09810 33.129 3.66e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01384 K17260 - sind:105177452 179.874