Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01383 ATGTATCTATTCAACTTAGAGGATTTGGGAGTTAGGTTTTCGGCTTCTATTCTACTGTTGCTGATCAATCAATCTACTGTTGTGGTTATCTTATTTTCTGATTTTTCATTTCTGATTTTTGATCTAGCAAAGGAAGCTAGTTTGCAAGAAACATTTGAGTTCAAAGGACACCTGAGGAGATGGAGTTTGACCGGATGCTTGATGATTTCAGCCCTTGGTTTGTTGAGTGGTGGGGAACAGGAGTACTTCCTGTTGATGCGGATTTGCTCCCCCCCTGCAGTTCCTGATTACAGAACACCTGTTAGGCTTCTTCCTGCCAAAATGCATCCAAATCTTCAAGGTCTGGCATATGCCATTCTTAAGCTGTGGGAGAAAAGTTTGGTCGCAAAGATTGCTGTCAAGTTTGGTGTCCAGAATACGAACAATGAACTGATGGCTCTGGAACTGAAGGTCCAGGAGTTACCTTCCGTTTTTATAACTTTTCTTGCATGGGGCATAGCTGAGGTGATTTTTTTCATATTCACCGATAATATGGTTGATGTACCAGGGCCTTCCATTTATGAAGAAAGTCTATCTATTACGATTTCTTTAAGGTCGAACTTGCAGTTTATCCATCTGCCTGACTGCCACTATACCTGCATATATGACAAACTGAGTACTACTCTGGCAAAGATAAAGACAACTCTTCTAAGAATCTTTGCATTTAAGGAATGTAATTTTCTTTATTCCAAGGACCTGTTTTTGCTTTGTGTTACAGGGGAGAGAGCTATTAATGTACGGTGGGATTTGAAAGCTTTGAGCCTTTGGATTCAACAGTGGAATTATCTACCAATGTTATGTGGGATAAATCAGGAAACTGAGTACAAGGAGGGGAAAAAAATAATTGAATGTGCAGCTACGTCAGAGATTATAATTGGTTTGAGGAGAGGATATGATTTTGATTTACATCTTAATATGTTTTTCCCAGAATTTCGCACAATCAAACTTCTCTGGACCCTTCTTTTACTCATCAAGATTCTGTTTTGTTTGCTTATTGGATTACTTATAGACTCGGGTAATGGTGTCACTCATGTGGTTCCAGTTGTTGATGGCTATTCATTCCCTTATCTGACGAAACGGATGAATGGGATTGAGACCACTATCTTTGTTAAAAATTATACTCTTCCTGATGGAAGGGTCATTAAAGTAGGGACAGAAAGGTTCCAGGCCCATGAGGCTCTTTTCACACCGTTAGGTGATGGAATGGCTGACATGGTGTTTCGCTGCATTCAAGAAATGGATATCGACAACCGGATGATGCTTTATCAACACATTGTTTTAAGTGGAGGGAGCACCATGTATCCTGGATTACCTAGCCGTGAGCTGAGAAGTCTTGATAGTTAG 1383 0.4013 MYLFNLEDLGVRFSASILLLLINQSTVVVILFSDFSFLIFDLAKEASLQETFEFKGHLRRWSLTGCLMISALGLLSGGEQEYFLLMRICSPPAVPDYRTPVRLLPAKMHPNLQGLAYAILKLWEKSLVAKIAVKFGVQNTNNELMALELKVQELPSVFITFLAWGIAEVIFFIFTDNMVDVPGPSIYEESLSITISLRSNLQFIHLPDCHYTCIYDKLSTTLAKIKTTLLRIFAFKECNFLYSKDLFLLCVTGERAINVRWDLKALSLWIQQWNYLPMLCGINQETEYKEGKKIIECAATSEIIIGLRRGYDFDLHLNMFFPEFRTIKLLWTLLLLIKILFCLLIGLLIDSGNGVTHVVPVVDGYSFPYLTKRMNGIETTIFVKNYTLPDGRVIKVGTERFQAHEALFTPLGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRELRSLDS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01383 460 SUPERFAMILY Actin-like ATPase domain 346 457 IPR043129 -
Trre10g01383 460 Gene3D Actin; Chain A, domain 4 374 414 - -
Trre10g01383 460 PANTHER ACTIN 381 453 IPR004000 -
Trre10g01383 460 Gene3D - 346 460 - -
Trre10g01383 460 Pfam Actin 379 453 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01383 Trre-Chr10 11446419 11458658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01383 346 453 Cytoskeleton Gene Families AT5G09810 32.515 8.79e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01383 K17260 - sind:105177452 171.014