Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01382 ATGTATCTATTCAACTTAGAGGATTTGGGAGTTAGGTTTTCGGCTTCTATTCTACTGTTGCTGATCAATCAATCTACTGTTGTGAGGAAGCTAGTTTGCAAGAAACATTTGAGCATAGTTCAAAGGACACCTGAGGAGATGGAGTTTGACCGGATGCTTGATGATTTCAGCCCTTGGTTTGTTGAGTGGTGGGGAACAGGAGTACTTCCTGTTGATGCGGATTTGCTCCCCCCCTGCAGGAGAAATAGAAATCTTCAAGGTCTGGCATATGCCATTCTTAAGCTGTGGGAGAAAAGTTTGGTCGCAAAGATTGCTGTCAAGTTTGGTGTCCAGAATACGAACAATGAACTGATGGCTCTGGAACTGAAGGTCCAGGAGTTACCTTCCGTTTTTATAACTTTTCTTGCATGGGGCATAGCTGAGGTGATTTTTTTCATATTCACCGATAATATGGTTGATGTACCAGGGCCTTCCATTTATGAAGAAAGTCTATCTATTACGATTTCTTTAAGGTCGAACTTGCAGTTTATCCATCTGCCTGACTGCCACTATACCTGCATATATGACAAACTGAGTACTACTCTGGCAAAGATAAAGACAACTCTTCTAAGAATCTTTGCATTTAAGGAATGTAATTTTCTTTATTCCAAGGACCTGTTTTTGCTTTGTGTTACAGGGGAGAGAGCTATTAATGTACGGTGGGATTTGAAAGCTTTGAGCCTTTGGATTCAACAGTGGAATTATCTACCAATGTTATGTGGGATAAATCAGGAAACTGAGTACAAGGAGGGGAAAAAAATAATTGAATGTGCAGCTACGTCAGAGATTATAATTGGTTTGAGGAGAGGATATGATTTTGATTTACATCTTAATATGTTTTTCCCAGAATTTCGCACAATCAAACTTCTCTGGACCCTTCTTTTACTCATCAAGATTCTGTTTTGTTTGCTTATTGGATTACTTATAGACTCGGGTAATGGTGTCACTCATGTGGTTCCAGTTGTTGATGGCTATTCATTCCCTTATCTGACGAAACGGATGAATGGGATTGAGACCACTATCTTTGTTAAAAATTATACTCTTCCTGATGGAAGGGTCATTAAAGTAGGGACAGAAAGGTTCCAGGCCCATGAGGCTCTTTTCACACCGTTAGATGTTGAAGGTGATGGAATGGCTGACATGGTGTTTCGCTGCATTCAAGAAATGGATATCGACAACCGGATGATGCTTTATCAACACATTGTTTTAAGTGGAGGGAGCACCATGTATCCTGGATTACCTAGCCGTGAGCTGAGAAGTCTTGATAGTTAG 1311 0.4043 MYLFNLEDLGVRFSASILLLLINQSTVVRKLVCKKHLSIVQRTPEEMEFDRMLDDFSPWFVEWWGTGVLPVDADLLPPCRRNRNLQGLAYAILKLWEKSLVAKIAVKFGVQNTNNELMALELKVQELPSVFITFLAWGIAEVIFFIFTDNMVDVPGPSIYEESLSITISLRSNLQFIHLPDCHYTCIYDKLSTTLAKIKTTLLRIFAFKECNFLYSKDLFLLCVTGERAINVRWDLKALSLWIQQWNYLPMLCGINQETEYKEGKKIIECAATSEIIIGLRRGYDFDLHLNMFFPEFRTIKLLWTLLLLIKILFCLLIGLLIDSGNGVTHVVPVVDGYSFPYLTKRMNGIETTIFVKNYTLPDGRVIKVGTERFQAHEALFTPLDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRELRSLDS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01382 436 SUPERFAMILY Actin-like ATPase domain 319 433 IPR043129 -
Trre10g01382 436 Pfam Actin 351 429 IPR004000 -
Trre10g01382 436 Gene3D Actin; Chain A, domain 4 345 389 - -
Trre10g01382 436 Gene3D - 315 436 - -
Trre10g01382 436 SMART actin_3 101 436 IPR004000 -
Trre10g01382 436 PANTHER ACTIN 354 429 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01382 Trre-Chr10 11446419 11458658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01382 319 429 Cytoskeleton Gene Families AT5G09810 33.129 3.02e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01382 K17260 - sind:105177452 179.874