Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01374 ATGACGAAAACTGCTTCCGATGCCAAACCTGCTGATAACCGGTTGAAGCGCAAAGGCGCTGGAGCTGGAACGAAGCAATCGAAGAAAGCTAGCAAGGATCCAAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTGTTCATGTCTGAATTCAGAGAGAGATTCAAGAAGGAGAATCCTAACAACAAGTCCGTTGCTGTGGTTGGGAAAGCTGGTGGTAAAGAGTGGAAGGCAATGTCTGCTGCGGACAAGGCTCCGTACATTGCCACAGCTGAGAAGAAGAAGGAAGAGTACGAGAAGACAATTCGTGCCTACAACCTTGGCTTGTCTGAGGGGAAAAATCCTTCTGAGGAAGAAGGATCTGACAAGTCAAAGTCAGAAGTCAATGATGAGGATGACGATGATGATGATGAGGATGATGAGTAG 426 0.4742 MTKTASDAKPADNRLKRKGAGAGTKQSKKASKDPNKPKRPPSAFFVFMSEFRERFKKENPNNKSVAVVGKAGGKEWKAMSAADKAPYIATAEKKKEEYEKTIRAYNLGLSEGKNPSEEEGSDKSKSEVNDEDDDDDDEDDE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01374 141 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Trre10g01374 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Trre10g01374 141 Gene3D High mobility group box domain 21 127 IPR036910 -
Trre10g01374 141 MobiDBLite consensus disorder prediction 1 43 - -
Trre10g01374 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 139 IPR031061 -
Trre10g01374 141 Coils Coil 88 108 - -
Trre10g01374 141 SMART hmgende2 36 107 IPR009071 -
Trre10g01374 141 MobiDBLite consensus disorder prediction 107 141 - -
Trre10g01374 141 SUPERFAMILY HMG-box 25 107 IPR036910 -
Trre10g01374 141 CDD HMG-box_AtHMGB1-like 38 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01374 Trre-Chr10 11384640 11385693 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre10g01374 HMG_box 7.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01374 K25507 - gmx:100499992 194.126