Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01361 ATGGGTGTTTGTTTTGCTTCACTCTCTCGCCAACCACCACCCTCTTCCCTCAATATTCCTCACACTTCAGGTTCAAGGAGTAATAATAGTGAAGAGGACGATACTAAGAAAGAGTCGTCATCATATAGTAAGAGTAAAGTTTGGGAGATGGAAAGTATTGAAAATGGTAGTAAAGAAGAAGGAAGCATAACTATAAGTGGGAAGTTTCTAGAAATGCCAAATTTGAAGGAGTTTAGTTATGGAGATTTGAAAATTGCCACAAAGAATTTCAAGTCAGATGCATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGAATGCTGAGACACTCACTCCTACCAAAGCTGGTTCTGGAATGATAGTGGCCATTAAGAAATTGAAATCAGATAGTGTGCAAGGTATTCAAGAATGGCAGTCAGAAATCAACTTTTTAGGAAGAATTTCTCACCCCAATTTGGTCAAGCTATTGGGTTATTGTACAGACGGTGATGAATTTCTTCTTGTGTACGAGTTCATGCCAAGGGGAAGCTTAGAGAGCCATCTCTTTAAAAGAAATCCTAACTTAGAACCACTTTCATGGAACACTAGACTCAAAATCGCTATTGATGCAGCTCGAGGTTTGGCATTCTTGCACTCATCAGAAAAACAAATCATATATAGAGATTTCAAAGCTTCCAATATACTTCTTGATGTGGATTACAATGCAAAGATTTCAGATTTTGGGTTGGCGAAATTTGGGCCATCTGGAGAAAATTCACATGTGACGACTCGGATAATGGGCACGTATGGTTATGCTGCTCCAGAATACATTGCAACAGGTCATTTGTATGTGAAGAGCGATGTTTATGGATTTGGTGTGGTGTTGCTTGAAATGTTGACAGGGTTGAAAGCACTTGATTTAAAAAGGCCTACAAAGAAACAAAATCTAGTTGAATGGATTAATCCTTATCTTTCTGATAAAACAAAGTTGAAAGGTAATGTTGTGGATTATAGGTTAGACGGCCAATATTCACCAAAAGCAGCATTTGAAACAGCTCAGCTCATTCTTAAATGCCTTGAATCTGACCCTAAAAAACGTCCTTCTATGGAAGATGTTTTGGAGACATTAGAAGACATAAACACTATTAAGGATAAAAGGAAAATATCCAAGAATCATTGTACTAAGTCTGCAACTATGTAG 1191 0.377 MGVCFASLSRQPPPSSLNIPHTSGSRSNNSEEDDTKKESSSYSKSKVWEMESIENGSKEEGSITISGKFLEMPNLKEFSYGDLKIATKNFKSDALLGEGGFGKVYKGWLNAETLTPTKAGSGMIVAIKKLKSDSVQGIQEWQSEINFLGRISHPNLVKLLGYCTDGDEFLLVYEFMPRGSLESHLFKRNPNLEPLSWNTRLKIAIDAARGLAFLHSSEKQIIYRDFKASNILLDVDYNAKISDFGLAKFGPSGENSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLKALDLKRPTKKQNLVEWINPYLSDKTKLKGNVVDYRLDGQYSPKAAFETAQLILKCLESDPKKRPSMEDVLETLEDINTIKDKRKISKNHCTKSATM 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01361 396 CDD STKc_IRAK 96 376 - -
Trre10g01361 396 ProSitePatterns Protein kinases ATP-binding region signature. 96 129 IPR017441 GO:0005524
Trre10g01361 396 Pfam Protein tyrosine and serine/threonine kinase 93 373 IPR001245 GO:0004672|GO:0006468
Trre10g01361 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Trre10g01361 396 SUPERFAMILY Protein kinase-like (PK-like) 66 374 IPR011009 -
Trre10g01361 396 MobiDBLite consensus disorder prediction 27 44 - -
Trre10g01361 396 FunFam Serine/threonine-protein kinase BIK1 56 175 - -
Trre10g01361 396 ProSiteProfiles Protein kinase domain profile. 90 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01361 396 Gene3D Phosphorylase Kinase; domain 1 63 175 - -
Trre10g01361 396 MobiDBLite consensus disorder prediction 9 26 - -
Trre10g01361 396 Gene3D Transferase(Phosphotransferase) domain 1 176 395 - -
Trre10g01361 396 PANTHER OS01G0588500 PROTEIN-RELATED 34 377 - -
Trre10g01361 396 FunFam Serine/threonine-protein kinase PBS1 176 392 - -
Trre10g01361 396 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01361 Trre-Chr10 11195551 11198922 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01361 76 381 Glycoside Hydrolase AT3G07070 47.883 2.09e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre10g01361 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01361 - - gmx:100794193 524.628