Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01359 ATGATGGTGGCCATAAAGAATTTGAAATCAGATAGTGTGCAAGGTGTTCAAGAATGGCAGTCAGAAATCAACATTTTAGGAAGGATTTCTCACCCTAATTTGGTCAAGCTATTGGGTTATTATACGAACGGTGATGAATTTCTCCTTGTGTACGAGTTCATGGGAAGCTTAGAGAGCCATCTCTTTAAAAGAAATCCTAAGTTAGAACCACTTTCATGGAACACTAGACTCAAAATTACTATTGATGCAGCTCGAGGCTTGGCATTCTTGCACTCATCAGAAAAGCAAATCATATATAGAGATTTCAAAGCTTCCAATATACTTCTTGATGGGAATTACAATGCAAAGATTTCAGATTTTGGGTTGGCAAAATTTGGGCATTGCAACAGGCAAGCACTTGATTTAAAAAGGCCTACAGAGAAGCAAAATCTAGTTGAATGGATTAAGCCTTCTCTTTCTGATAAAAGAAAGTTGAAAGGTAACATTGTGGATCATAGATTAGAGGGCCAATATTCACCAAAAGCAGCATTCAAAACAGCTCAACTTATTCTTAAATGCCTTGAATCTAACCCTAAAATGCGTCCTTCTATGAATGATGTTTTGGTGACATTAGAAGGCATACACGCTATTAAGGATAAAAGAAAAATTTCCAAGAATCGTTGTACTAACTCTGCAACTATGTAG 684 0.3655 MMVAIKNLKSDSVQGVQEWQSEINILGRISHPNLVKLLGYYTNGDEFLLVYEFMGSLESHLFKRNPKLEPLSWNTRLKITIDAARGLAFLHSSEKQIIYRDFKASNILLDGNYNAKISDFGLAKFGHCNRQALDLKRPTEKQNLVEWIKPSLSDKRKLKGNIVDHRLEGQYSPKAAFKTAQLILKCLESNPKMRPSMNDVLVTLEGIHAIKDKRKISKNRCTNSATM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01359 227 FunFam Os07g0541700 protein 53 139 - -
Trre10g01359 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 97 109 IPR008271 GO:0004672|GO:0006468
Trre10g01359 227 PANTHER OS01G0588500 PROTEIN-RELATED 128 208 - -
Trre10g01359 227 SUPERFAMILY Protein kinase-like (PK-like) 2 209 IPR011009 -
Trre10g01359 227 PIRSF ILK 1 166 - -
Trre10g01359 227 PIRSF ILK 162 222 - -
Trre10g01359 227 Gene3D Transferase(Phosphotransferase) domain 1 55 131 - -
Trre10g01359 227 Gene3D Phosphorylase Kinase; domain 1 1 54 - -
Trre10g01359 227 Gene3D Transferase(Phosphotransferase) domain 1 132 226 - -
Trre10g01359 227 Pfam Protein tyrosine and serine/threonine kinase 2 155 IPR001245 GO:0004672|GO:0006468
Trre10g01359 227 ProSiteProfiles Protein kinase domain profile. 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01359 Trre-Chr10 11179905 11187122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01359 3 227 Receptor kinase-like Gene Family AT4G02010 36.749 5.83e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre10g01359 PK_Tyr_Ser-Thr 8.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01359 - - qsu:112015035 284.263