Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01354 ATGGAAAACTACAGGGATGTTATTCATTCAACTGACAACGATTCATCGGATGCATCTAGTGCTGAACACAGTGATGATGCTGGATATAGTGATGATGAAGATTGTAACTATGATGTATCCGATGAAGACCAAAGTTCAGATGATGAAGATGTTGCTGATAATTACGATGGCTCTAAAGCAATTGAATCGGAAGAGCCAAATCAGGAAGTACATGTGGGTGAACATATGGTAAGGATTAATTCCCTTACTGCTGAGGAAATTCGTCGTTTGGAATTTGGAAATTGCGATGAAGCGTATGAATTTTACTATCAATACGGTAAATGTAAAGGATTTGCTATTAGAAGAAGCGATATGAGAAGAAAGCCCAAAGGTACTGGAATGATAGTAATGAATCAGTTTGTCTGCAACAAACGTGGATTAAGAGACGTGACCAACGTCTGA 441 0.3832 MENYRDVIHSTDNDSSDASSAEHSDDAGYSDDEDCNYDVSDEDQSSDDEDVADNYDGSKAIESEEPNQEVHVGEHMVRINSLTAEEIRRLEFGNCDEAYEFYYQYGKCKGFAIRRSDMRRKPKGTGMIVMNQFVCNKRGLRDVTNV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01354 146 MobiDBLite consensus disorder prediction 1 26 - -
Trre10g01354 146 MobiDBLite consensus disorder prediction 1 74 - -
Trre10g01354 146 Pfam FAR1 DNA-binding domain 100 142 IPR004330 -
Trre10g01354 146 MobiDBLite consensus disorder prediction 27 51 - -
Trre10g01354 146 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 142 - -
Trre10g01354 146 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01354 Trre-Chr10 11138919 11139359 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g01354 FAR1 3e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01354 - K17604 tpra:123887991 115.161