Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01348 ATGGACCAAAACATTTCTAACAACTCAACTTCAACCAACAACAACCCATCACCACCCAATCCTAATACCCCACCTCACACCCCCAATGAAACAAACCCTACCGGCGAGGGTTTGGAAAAAATTGCCAAAACCTCTGAAGAGATTTTGGCGGAGTTGAACGCCCCTAGTGATGAGGAGAAAACTAATGAAAAAGGTGAAGGTGGCGCCAATGAAGATGGTGGGAATCAAAATAGGGTTTCTAGGGCTATGGCTGTTGCTTTGACTGCTGACGGTTCGAATACGTCTGCGGTTGAGCAAGGTGGTCGAAATGATCGTGTCCAACCTTTTAAGAAGAGAAAGTGCAATCCAATTAGAGACCCTCCGGCTGGAAAACCAAAATGTCCAGAATGTCATAAGGAGTTTGCATCATGGAGGGCTGCTTTCGGGCATATGCGCACGCATCCCGAGCGTTCACACCGTGGATTCTTTCCTCCTCCTACTTTTACCCCCACTGCACCAGTGGCTGCGATCGGTGTGGCTGAAGACGATGGTCGTCCTAACAAAGTGGATGAAGGGGTGTTAGCAGTGGTTCGTGAACTTGTAATTGATCTAAATAGGTCAATTGGAGGGGCAGCTGAATCCTCCGGCGCTGGTGGCAGCAATGCAAGTGGGAGAAATACAGAGGCACCTGCCCCGGCGCCTGAAAATGATGAGGGCAGAAGGAAAAATATGTTTGACTTGAATGAACTGCCTTCTAATGATGACGATGACGATGAAGCTGAATAG 765 0.4837 MDQNISNNSTSTNNNPSPPNPNTPPHTPNETNPTGEGLEKIAKTSEEILAELNAPSDEEKTNEKGEGGANEDGGNQNRVSRAMAVALTADGSNTSAVEQGGRNDRVQPFKKRKCNPIRDPPAGKPKCPECHKEFASWRAAFGHMRTHPERSHRGFFPPPTFTPTAPVAAIGVAEDDGRPNKVDEGVLAVVRELVIDLNRSIGGAAESSGAGGSNASGRNTEAPAPAPENDEGRRKNMFDLNELPSNDDDDDEAE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01348 254 MobiDBLite consensus disorder prediction 202 254 - -
Trre10g01348 254 MobiDBLite consensus disorder prediction 1 129 - -
Trre10g01348 254 MobiDBLite consensus disorder prediction 53 67 - -
Trre10g01348 254 MobiDBLite consensus disorder prediction 1 16 - -
Trre10g01348 254 MobiDBLite consensus disorder prediction 87 101 - -
Trre10g01348 254 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 4 165 - -
Trre10g01348 254 MobiDBLite consensus disorder prediction 227 242 - -
Trre10g01348 254 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Trre10g01348 254 MobiDBLite consensus disorder prediction 104 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01348 Trre-Chr10 11112780 11114371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01348 127 182 C2H2 Transcription Factor Family AT4G35280 48.214 3.45e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g01348 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01348 - - tpra:123904233 258.84