Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01347 ATGTTAAGCCCTAACCCTAACTCTTCCAAGAGCTCAATAGCTTCAGCAAAAGAAACCAATCCGCCGTTTAAGAGTTCTAAAGGATCTAAGGAAGAAGATATCTTGAAAATTGCTGTTGAAGTGTTGGAAGAGCTGAAAGTGGGCAAGAACAAGATTGGTCGTGGAGATTCAAAGACTGTGGCAGCAAATAGTTCGATGGCAGAGGTGATGGGGGGAGTGGTCACTGATGGCCGATCTATAAAGAAGAGAAAGAGTAACATTGAAGTGAAAGACATTAATGCCTCCAAATATCCAATCTGCCCTAGGTGTAAAGGAGAGTTTTTCACATTCAATGCTGTGGTTGAACACTTGCGAAAAAACCCTAATTGTGCTGCTAGTGGTACCTCTAACACATCTCAACCCGATCTTAACAAGGATGCTGATATGGTGCAACCAATGGAGATAGAGGGGTCCTCTAATGCTGCTGAATGTAAGGGTTGTGGATTCAACTTGAATGAGCTACCTCCTCCTGAGGAAGAAGGAAAGAAAAAGAGGGCAACCAAGGAGCATGTTGCAAAAATAACTTTATCGGATTTGGTCAAGTACTTTGATATGCCAATTCTTGAAGCTTCAAAGAATCTAAATGTTGGAACTACTGTTCTCAAAAGAAGGTGCAGAGAATTGGGTCTTCCTCGCTGGCCTCACAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCATCAGGAAGAGGCAGAACATAAGGAAATGAAGAATAAAGCTGCAGCAATGGTAGTAAGAAGGAAGCAAAAGATTGTGGCAAATGAAAAAGAAAGGATAGAGAAGAATCCATTCACTGCCATACAGAATCAGACCAAGAGATTGAGACAAGATGTTTTCAAGAGAAGGCACAACGCTAGAGTTATGGAAAAGCAGAATTCTAAGGTAGCAAGCAAGTAG 942 0.4151 MLSPNPNSSKSSIASAKETNPPFKSSKGSKEEDILKIAVEVLEELKVGKNKIGRGDSKTVAANSSMAEVMGGVVTDGRSIKKRKSNIEVKDINASKYPICPRCKGEFFTFNAVVEHLRKNPNCAASGTSNTSQPDLNKDADMVQPMEIEGSSNAAECKGCGFNLNELPPPEEEGKKKRATKEHVAKITLSDLVKYFDMPILEASKNLNVGTTVLKRRCRELGLPRWPHRKIKSLDSLIHDLHQEEAEHKEMKNKAAAMVVRRKQKIVANEKERIEKNPFTAIQNQTKRLRQDVFKRRHNARVMEKQNSKVASK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01347 313 ProSiteProfiles RWP-RK domain profile. 169 255 IPR003035 -
Trre10g01347 313 MobiDBLite consensus disorder prediction 1 23 - -
Trre10g01347 313 Pfam RWP-RK domain 186 234 IPR003035 -
Trre10g01347 313 PANTHER PROTEIN RKD4 124 301 IPR044607 GO:0003700
Trre10g01347 313 MobiDBLite consensus disorder prediction 1 30 - -
Trre10g01347 313 Coils Coil 234 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01347 Trre-Chr10 11100873 11104086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01347 175 312 AtRKD Transcription Factor Family AT4G35590 57.554 4.40e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre10g01347 RWP-RK 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01347 - - tpra:123904231 405.216