Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01344 ATGGGAGGTGACGCTTCCGCTGATACTTCGACGGAGCAACAACAATCTACCGACGGAGTTAAGATCAACATTCGTTGTTCCAATGGTTCCAAATTTTCCGTTCAAATTAGCCTCGATTCCACCGTTGGTTCCTTTAAGGATGTTGTTGCTCAGAATTGTGATATCTCTGCTGATCAACAGCGTTTGATTTATAAGGGTCGGATCCTTAAGGATGATCAAACCCTTCAAAGCTATGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTGCGAATACAACTGGTGGGACTAATACTGGTGGTGCCAATACCACAACTACTAATGCTAGAGGTGCTGGTGCTAATGAGGGTGGGGGGTTAGGAGGACCTGGACTTGGAGCTTCATTGTTTCCAGGTCTCGGTGGTATCAATGGGATGGGAGGAGGAGGTGGCCTTAATAGTTTATTTGGAGCGGGACCTCCAGATCTTGAACAGTTGCAGCAACCATTTATGTCAAATCCTAATTTAGTGAGAGAAATTATGAACTCACCTGCCATGCAAAATTTATTAAATAATCCCGAGATAGTGCGCAATCTTCTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCAAGCACACTTCGCCAGACACTTGAGGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAATATTGAATCTTCTCCTGAGGGGTTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGGAACACAGGAAATGAGAGCGCCAGAGGTTTGGGAACTCAAGGTGGGCAAACGAGGAATCAATCAACCAATCCCTCAACTACTAGTGCTGAAGCAACTTCCCCTGTGCCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTCCAACTGGAGGTGCCCAAACTAACGTTAGGAGGTCAACAACTACTGGTGCGGATGCTCGGCAGCAGACACCCACTGGCTTAGGCGGGCTTGGTATGCCAGATCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGTTCATTGTCCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAACACTGATCAGCGTGGGATGCCTGATCTAAATTCAATGAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCATGTTTTCCTCACCCGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAGCTTGGTCAGCAGCAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGGAACAACTTGGGGCTGGAGATGTTATCGAGCATGTTCGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCTACCCAACTTTCCCAACTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACATAAGGGCTCTTATCGCTACATCAGGAAATGTCCATGCAGCGGTTGAGCGACTTTTGGGAAACACTGGACAGTAG 1632 0.4651 MGGDASADTSTEQQQSTDGVKINIRCSNGSKFSVQISLDSTVGSFKDVVAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPANTTGGTNTGGANTTTTNARGAGANEGGGLGGPGLGASLFPGLGGINGMGGGGGLNSLFGAGPPDLEQLQQPFMSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNESARGLGTQGGQTRNQSTNPSTTSAEATSPVPNTNPLPNPWSSAPTGGAQTNVRRSTTTGADARQQTPTGLGGLGMPDLEGMLGGMPDAGSLSQLMQNPAISQMMQSILSNPQTMNQILGMNTDQRGMPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGTGNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01344 543 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Trre10g01344 543 SUPERFAMILY UBA-like 497 539 IPR009060 GO:0005515
Trre10g01344 543 MobiDBLite consensus disorder prediction 323 349 - -
Trre10g01344 543 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Trre10g01344 543 MobiDBLite consensus disorder prediction 449 469 - -
Trre10g01344 543 MobiDBLite consensus disorder prediction 275 356 - -
Trre10g01344 543 SUPERFAMILY Ubiquitin-like 9 102 IPR029071 -
Trre10g01344 543 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 495 540 IPR015940 -
Trre10g01344 543 CDD UBA_PLICs 501 539 - -
Trre10g01344 543 Pfam UBA/TS-N domain 501 537 IPR015940 -
Trre10g01344 543 SMART uba_6 501 539 IPR015940 -
Trre10g01344 543 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Trre10g01344 543 MobiDBLite consensus disorder prediction 275 315 - -
Trre10g01344 543 CDD Ubl_Dsk2p_like 20 92 - -
Trre10g01344 543 PANTHER UBIQUILIN 15 538 IPR015496 -
Trre10g01344 543 Gene3D - 196 253 - -
Trre10g01344 543 FunFam Ubiquitin domain-containing protein DSK2b 484 542 - -
Trre10g01344 543 SMART ubq_7 20 91 IPR000626 GO:0005515
Trre10g01344 543 Gene3D - 6 103 - -
Trre10g01344 543 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Trre10g01344 543 Gene3D - 483 543 - -
Trre10g01344 543 SMART CBM 200 239 IPR006636 -
Trre10g01344 543 SMART CBM 146 187 IPR006636 -
Trre10g01344 543 SMART CBM 404 439 IPR006636 -
Trre10g01344 543 SMART CBM 350 401 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01344 Trre-Chr10 11078066 11082933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01344 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.03e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01344 K04523 - gmx:100797539 791.186