Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01342 ATGAAGCTTTCTGAGGACAAGAGTTATAACTCAAACTCAATCAACCCCACAAGTTTTCAAGGAGGGTTAGATTCTAGAAAGGTTGGGCAAAACAGAAGGGTGTTGGGAGTGATTAATCAGAATCTGGTTGTGGAAGGAAGACCATATCCTTGTGTTGTTAACAAAAGAGCATTGTCAGAAAGAAATGAGGTTTGTGAGAAGAAGCAAGCGGATCCGGGGCATCGACCCATTACTAGGAGGTTTGCTGCAAAAATTGTTGCTGGCACCCAAAAATCTAATGCTGAGGGAACTACCAAAAGGTCAAATTTGGGAAATTCAAATGGATTTGCAGATAGTATATTTGTTGATGATGAACACAAGCCGGTGGAAGATCAGCCAGTGCCAATGGCTTTAGAGCAAATTGAACCAATGCTTGTTGGATCAGATCAAATGGAGGAAGTTGAGATGGAGGATATAATGGAAGAGCCTATTTTGGACATTGACACCTCTGATGCAGATAATCCTCTTGCTGTTACTGAATATATTGACGATCTTTATTCTTACTACAGAAAAGTTGAGAGTTTTGGCTGTGTCTCACCAAATTATATGGCACAACAATTTGATATTAATGAAAGGATGAGGGCCATACTGATTGACTGGCTTATTGAGGTGCACGACAAATTCGACCTTATGCACGAGACACTGTTTCTTACAGTTAATCTTATAGACAGATTTTTGGAAAAGCAATCAGTGGTAAGAAAGAAGCTTCAGTTGGTTGGCCTAGTGGCAATGCTTTTGGCATGCAAATATGAGGAAGTTTCTGTGCCTGTGGTTGGAGATCTGATTGTTATATCAGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGAGAAGGTGATGGTCAACACATTGAAGTTTAACATATCTGTGCCAACAGCATATGTTTTCATGAAAAGGTTCCTCAAGGCAGCTCAAGCAGACAGAAAACTTGAGTTGCTAGCTTTCTTCTTGGTAGAGCTATCTCTAGTAGAATATGCAATGTTGAAGTTCCCTCCTTCTAAGCTCGCTGCAGCGGCTGTCTATACAGCTCAATGCACTATATATGGTGTCAAACTGTGGAATAAGACGTGTGAATGGCACACCAACTACTCAGAAGATCAACTACTAGAGTGCTCTAGTTTAATGGTTGAATTTCACAAGAAGGCCGCGACAGGGAAACTTACCGGGGCACATAGGAAGTATTGTACATCCAAATTTAGCTTTACTGCAAAATGTGAACCAGCAAGCTTTCTTCTGCAAAATGATAATGAGAACAACCTGTAG 1305 0.4084 MKLSEDKSYNSNSINPTSFQGGLDSRKVGQNRRVLGVINQNLVVEGRPYPCVVNKRALSERNEVCEKKQADPGHRPITRRFAAKIVAGTQKSNAEGTTKRSNLGNSNGFADSIFVDDEHKPVEDQPVPMALEQIEPMLVGSDQMEEVEMEDIMEEPILDIDTSDADNPLAVTEYIDDLYSYYRKVESFGCVSPNYMAQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLIVISDRAYTRKEVLEMEKVMVNTLKFNISVPTAYVFMKRFLKAAQADRKLELLAFFLVELSLVEYAMLKFPPSKLAAAAVYTAQCTIYGVKLWNKTCEWHTNYSEDQLLECSSLMVEFHKKAATGKLTGAHRKYCTSKFSFTAKCEPASFLLQNDNENNL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01342 434 PIRSF Cyclin_A_B_D_E 23 434 IPR046965 GO:0016538|GO:0044772
Trre10g01342 434 ProSitePatterns Cyclins signature. 207 238 IPR006671 -
Trre10g01342 434 Gene3D - 191 303 - -
Trre10g01342 434 Gene3D - 177 416 - -
Trre10g01342 434 SUPERFAMILY Cyclin-like 304 422 IPR036915 -
Trre10g01342 434 Pfam Cyclin, N-terminal domain 177 303 IPR006671 -
Trre10g01342 434 FunFam G2/mitotic-specific cyclin-1 292 417 - -
Trre10g01342 434 SMART Cyclin_C_2 305 422 IPR004367 -
Trre10g01342 434 PANTHER CYCLINS 133 394 IPR039361 -
Trre10g01342 434 CDD CYCLIN_AtCycB-like_rpt1 154 300 - -
Trre10g01342 434 SMART cyclin_7 309 391 IPR013763 -
Trre10g01342 434 SMART cyclin_7 212 296 IPR013763 -
Trre10g01342 434 Pfam Cyclin, C-terminal domain 305 420 IPR004367 -
Trre10g01342 434 SUPERFAMILY Cyclin-like 166 302 IPR036915 -
Trre10g01342 434 MobiDBLite consensus disorder prediction 1 25 - -
Trre10g01342 434 CDD CYCLIN_AtCycB-like_rpt2 305 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01342 Trre-Chr10 11044987 11048462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01342 14 426 Core Cell Cycle Gene Families AT1G20610 56.398 2.70e-166 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01342 K21777 - gmx:100798068 687.567