Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01341 ATGAAGGTTTCTGAGGACAAGAATTCTAACACAAATTTTCAAGGAGGATTAGATTCTAGAAAGGTTGGGCAAAACAGAAGGGTGTTGGGAGTGATTAATCAGAATCTGGTTGTGGAAGGAAGACCATATCCTTGTGTTGTTAACAAAAGAGCATTGTCAGAAAGAAATGAGGTTTGTGAAAAGAAGCAAGCGGATCCGGGGCATCGACCCATTACTAGGAGGTTTGCTGCAAAAATTGCTGGTACACAAAAATCTAATACTGAGGGAACTACCAAAAGGTCAAACTTGGGAAATTCAAATGGATTTGCAGACTGTATATTTGTTGATGATGAACACAAGCCGGTGGAAGATCAGCCAGTGCCAATGGCTTTAGAGCAAATTGAACCAATGCTTGTTGGATCAGATCAAATGGAGGAGGTTGAGATGGAGGATATAATGGAAGAGCCTATTTTGGACATTGACACCTCTGATGCAGATAACCCTCTTGCTGTTACTGAATATATTGAAGATCTTTATTCTTACTACAGAAAAGTTGAGAGTACTGGCTGTGTCTCACCAAATTATATGGCACAACAATTTGACATTAATGAAAGGATGAGGGCCATACTTATTGACTGGCTTATTGAGGTCCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTGACTGTTAATCTGATAGACAGATTTTTAGAAAAGCAATCAGTGATAAGAAAGAAGCTTCAGTTGGTTGGTCTAGTGGCAATGCTTTTGGCATGCAAATATGAGGAAGTTTCTGTGCCTGTGGTTGGAGATTTAATTCTTATATCGGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGAGAAGGTGATGGTCAACACATTGAAGTTTAACATATCTGTGCCAACTGCATATGTTTTCATGAAAAGGTTTCTGAAGGCAGCTCAAGCAGACAGAAAACTTGAGCTGCTAGCTTTCTTCTTGGTAGAGCTATCTCTAGTAGAATATGCAATGTTGAAGTTCCCTCCTTCTCAGCTCGCTGCAGCTGCTGTCTATACAGCTCAATGCACTATATATGGTGTCAACCTGTGGAATAAGACGTGTGAATGGCACACCAACTACTCGGAAGATCAACTTTTAGAGTGCTCTAGTTTAATGGTTGATTTTCACAAGAAGGCCGCGACAGGGAAACTTACCGGGGCACATAGGAAGTATTGCACATCCAAATTTAACTTTACTGCAAAATGTGAACCAGCAAGTTTTCTTCTGCAAAATGATAATGAGAACAATCTGTAG 1284 0.4034 MKVSEDKNSNTNFQGGLDSRKVGQNRRVLGVINQNLVVEGRPYPCVVNKRALSERNEVCEKKQADPGHRPITRRFAAKIAGTQKSNTEGTTKRSNLGNSNGFADCIFVDDEHKPVEDQPVPMALEQIEPMLVGSDQMEEVEMEDIMEEPILDIDTSDADNPLAVTEYIEDLYSYYRKVESTGCVSPNYMAQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVIRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNTLKFNISVPTAYVFMKRFLKAAQADRKLELLAFFLVELSLVEYAMLKFPPSQLAAAAVYTAQCTIYGVNLWNKTCEWHTNYSEDQLLECSSLMVDFHKKAATGKLTGAHRKYCTSKFNFTAKCEPASFLLQNDNENNL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01341 427 Gene3D - 184 296 - -
Trre10g01341 427 Pfam Cyclin, N-terminal domain 170 296 IPR006671 -
Trre10g01341 427 SMART cyclin_7 205 289 IPR013763 -
Trre10g01341 427 SMART cyclin_7 302 384 IPR013763 -
Trre10g01341 427 CDD CYCLIN_AtCycB-like_rpt2 298 414 - -
Trre10g01341 427 PANTHER CYCLINS 125 388 IPR039361 -
Trre10g01341 427 FunFam G2/mitotic-specific cyclin-1 285 410 - -
Trre10g01341 427 Gene3D - 170 409 - -
Trre10g01341 427 Pfam Cyclin, C-terminal domain 298 413 IPR004367 -
Trre10g01341 427 CDD CYCLIN_AtCycB-like_rpt1 147 293 - -
Trre10g01341 427 SMART Cyclin_C_2 298 415 IPR004367 -
Trre10g01341 427 SUPERFAMILY Cyclin-like 297 415 IPR036915 -
Trre10g01341 427 SUPERFAMILY Cyclin-like 159 295 IPR036915 -
Trre10g01341 427 ProSitePatterns Cyclins signature. 200 231 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01341 Trre-Chr10 11037654 11040927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01341 3 419 Core Cell Cycle Gene Families AT1G20610 55.556 4.15e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01341 K21777 - gmx:100798068 682.945