Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01300 ATGGCCATGGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAGTTGCAGATCCTTGAAATACCGGACAATGATATTCTTACTGCTGGATACAAAGCTGTTCTGCATGCCCACTCTGTAGTTGAGGAATGTGAGATTCTTGAGCTATTGCCACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTATCTTTGTAAAGAGTGGCGCTATTGTATTATGCCGTCTTCAGGTTAATAACGTGAACTTGTCTGATTTTCCACAACCAGGGAGTTTCACTCTCCGCACTGAAGGAAAAACTGTTGCTGTGGGGAAAATCACTGCTCTCTAA 339 0.41 MAMANPISTVTEFVAQLQILEIPDNDILTAGYKAVLHAHSVVEECEILELLPQIDPKTRKPIKKKVIFVKSGAIVLCRLQVNNVNLSDFPQPGSFTLRTEGKTVAVGKITAL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01300 112 CDD eRF3_C_III 8 112 - -
Trre10g01300 112 PANTHER TRANSLATION FACTOR 5 111 - -
Trre10g01300 112 Pfam Elongation factor Tu C-terminal domain 6 111 IPR004160 -
Trre10g01300 112 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 10 111 IPR009001 -
Trre10g01300 112 Gene3D Translation factors 8 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01300 Trre-Chr10 10725569 10727004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01300 6 112 Eukaryotic Initiation Factors Gene Family AT5G10630 30.357 9.34e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01300 K03267 - thj:104813913 169.474