LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g01298	ATGTTCAATTTTTCCACAGTTGCGTATAATCCTCAGCCCAACACACTCTTCTTCTCTCCCTTCCCATTCTTCCATTCTTCACTCACACCCCACCGCAACTTTCAATCTCTCAAATTCCCCACTAACTCCAACCTCCACAATTCTCTCTCCACATCACACCAAGTTGATAATGATGACGAAGAACATGTCATTGGAGATTGTCTTGTCTTCGAAGAAGGAATTTTCGAAGACCCCATTTTCCCTTCCGACAACCTCGTAAACAACAAAAAAACAACACCCATTTCAAAGAAAAAGAAGAAAAAAACAACTACAGTGATTGAGTCGGAAAATTTGGTTCCTGATAAATGGAGAGAAGTTCAAGCAGATTTAAACATAACGAAGAAAGATAGGCGTAAGATAGCTCAAGAAATTGAGTTCAATAGTAAGGTTTTGAAGAAGAAAAGAGGTTTGGTTCCTTTGAGGGATATAAATTTGGATGAGTATAAGGCTTATAAAGAAGCTAGATTGAAACAGTTGAAACCTTTGGTTCTTGATAAACCTCCAAGTTTTAGTTTTGCTGAGAAAGATGATGAGTTTGAAGAGGAATTAAGTGATGGGTCTGGTGATGATGAGAGGGTGAAACCTAAGAATCCTAGGTGGGCTGTTTATGGAAGAGGTTTGGATGATGTCAATGAGTTTTTGAATAGTGAGAGTTATGACCTTGCTACTAATAGAACCCAAGGTCGTCCTAAGTTGTTTACCAGGGAGGAGAAGGCTTTGCTCAGTAAGAAGAAGCCTGACTTGGAAGTTGCTACTTCAAATAAATGGCTTCCTCTGCACACTCTTGCTGCGAGCGGAGAATCTTTCCTTGTAGAAACTATGTTAAAGCACGATGTTGATATCAATGCTATGGATAAGGATGGTTTGACTGCTCTTTACAAAGCAATAATTGGAAGAAAGCATGCCATAACCAATTATCTCCTAAGAAACTCGGCCAATCCCTATGTTCAAGATAATGATGGGGCCACCTTGATGCACTACGCTGTACAAACGGCATCTGTCCCTACAATTAAAGTACTCTTATTGTATAATGTGGATATAAATCTTGCGGACAATGATGGCTGGACACCATTACATCTTGCTGTTCAAACTCAGAGAAATGATATAGTGAAGCTTCTGCTGATTAAAGGCGCCGATAAGACATTAAAAAACAAGGATGGTTTAACTCCGCTCGACCTTTGCCTTTACTCTGGTCAAACTACCAAAACATATGAGCTAATCAAGTTGTTGAAACAGCCTCCAAAACGATATAGAAGTAGAAATGAACGACAAATGGAGCAAAGAAACAATACAACTTTTTGA	1341	0.3915	MFNFSTVAYNPQPNTLFFSPFPFFHSSLTPHRNFQSLKFPTNSNLHNSLSTSHQVDNDDEEHVIGDCLVFEEGIFEDPIFPSDNLVNNKKTTPISKKKKKKTTTVIESENLVPDKWREVQADLNITKKDRRKIAQEIEFNSKVLKKKRGLVPLRDINLDEYKAYKEARLKQLKPLVLDKPPSFSFAEKDDEFEEELSDGSGDDERVKPKNPRWAVYGRGLDDVNEFLNSESYDLATNRTQGRPKLFTREEKALLSKKKPDLEVATSNKWLPLHTLAASGESFLVETMLKHDVDINAMDKDGLTALYKAIIGRKHAITNYLLRNSANPYVQDNDGATLMHYAVQTASVPTIKVLLLYNVDINLADNDGWTPLHLAVQTQRNDIVKLLLIKGADKTLKNKDGLTPLDLCLYSGQTTKTYELIKLLKQPPKRYRSRNERQMEQRNNTTF	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g01298	446	MobiDBLite	consensus disorder prediction	188	208	-	-
	Trre10g01298	446	Gene3D	-	339	445	IPR036770	-
	Trre10g01298	446	ProSiteProfiles	Ankyrin repeat region circular profile.	333	365	-	-
	Trre10g01298	446	PANTHER	ANKYRIN REPEAT FAMILY PROTEIN	160	429	-	-
	Trre10g01298	446	ProSiteProfiles	Ankyrin repeat profile.	300	332	IPR002110	GO:0005515
	Trre10g01298	446	ProSiteProfiles	Ankyrin repeat profile.	333	365	IPR002110	GO:0005515
	Trre10g01298	446	ProSiteProfiles	Ankyrin repeat region circular profile.	366	398	-	-
	Trre10g01298	446	SUPERFAMILY	Ankyrin repeat	253	419	IPR036770	-
	Trre10g01298	446	ProSiteProfiles	Ankyrin repeat profile.	366	398	IPR002110	GO:0005515
	Trre10g01298	446	FunFam	Ankyrin repeat domain-containing protein, chloroplastic	338	431	-	-
	Trre10g01298	446	FunFam	Ankyrin repeat domain-containing protein, chloroplastic	240	337	-	-
	Trre10g01298	446	Pfam	Ankyrin repeats (3 copies)	316	397	IPR002110	GO:0005515
	Trre10g01298	446	Gene3D	-	212	338	IPR036770	-
	Trre10g01298	446	SMART	ANK_2a	366	395	IPR002110	GO:0005515
	Trre10g01298	446	SMART	ANK_2a	333	362	IPR002110	GO:0005515
	Trre10g01298	446	SMART	ANK_2a	300	329	IPR002110	GO:0005515
	Trre10g01298	446	SMART	ANK_2a	399	428	IPR002110	GO:0005515
	Trre10g01298	446	SMART	ANK_2a	267	296	IPR002110	GO:0005515
	Trre10g01298	446	ProSiteProfiles	Ankyrin repeat profile.	267	299	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g01298	Trre-Chr10	10702626	10707152	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g01298	272	411	Ion Channels	AT2G25600	33.571	4.80e-14	72.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g01298	-		-	mtr:11424854	556.984