Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01297 ATGGAGGATTCTCCAGTAAGAAGGCTTTCAAGGTCCCCTTCTCCATGGAGGGCTCAATCAAGATCCAGGTCTAGGTCCAGGTCTCAGTCGGGATCCCTTGAAAGGCGCAGACCTAGGTCTCGGTCAAGGTCTCCTGAAATGCAAAGGCCTAGGTCTCTTTCAAGGTCTCCTGAAATGCAGCAGAGGCCTAGGTCTCTGTCAAGGTCTCCTGAAATGCAAATGCATAGATCTCAGTCAAGGTCTCTCGAAAGGCAGAGGCCTAGGTCTCGGTCAAGATCTCTTGAAATGCAAAGGCCTAGATCCCCCTCTAGAAGTCGTGGCAGATCAAGATCAAGGAGTCCTGATAGGAATGGTGGGGATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACCGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACTCGTATATCTCGAGGTTTTGCTTTTGTCACTATGGATTCTGTTGAGGATGCAAATCGCTGTATCAAGTACCTCAATCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCAAAGAGAAAGCGACCAAGAACTCCCACACCTGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGACCTCCTCGTGGTGACCGTGGAAGGCATCGGGGTGGATTTGGTCGTGATGATTATCCTTATCATAGGTCTCCAAGGCGCTCACCATATCGAGGTGGCAGGGATTATTCACCAAGGCACTCTCCCTACGGTGGAAGGTATAGGAGGGAAAGGTCTAGGTCACCTTATGCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGGCCTAGGTGA 870 0.4966 MEDSPVRRLSRSPSPWRAQSRSRSRSRSQSGSLERRRPRSRSRSPEMQRPRSLSRSPEMQQRPRSLSRSPEMQMHRSQSRSLERQRPRSRSRSLEMQRPRSPSRSRGRSRSRSPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKYLNQSVLEGRYITVERSKRKRPRTPTPGHYLGLKNTRDYGPPRGDRGRHRGGFGRDDYPYHRSPRRSPYRGGRDYSPRHSPYGGRYRRERSRSPYAPYGSPDRRYARGPR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01297 289 MobiDBLite consensus disorder prediction 13 27 - -
Trre10g01297 289 Gene3D - 59 205 IPR012677 -
Trre10g01297 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Trre10g01297 289 MobiDBLite consensus disorder prediction 218 252 - -
Trre10g01297 289 MobiDBLite consensus disorder prediction 195 289 - -
Trre10g01297 289 SMART rrm1_1 121 194 IPR000504 GO:0003723
Trre10g01297 289 MobiDBLite consensus disorder prediction 28 48 - -
Trre10g01297 289 MobiDBLite consensus disorder prediction 77 115 - -
Trre10g01297 289 SUPERFAMILY RNA-binding domain, RBD 116 229 IPR035979 GO:0003676
Trre10g01297 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Trre10g01297 289 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 109 280 - -
Trre10g01297 289 MobiDBLite consensus disorder prediction 1 127 - -
Trre10g01297 289 MobiDBLite consensus disorder prediction 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01297 Trre-Chr10 10697330 10699784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01297 116 205 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 1.93e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01297 K12897 - gmx:100527350 282.337