Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01296 ATGGCGGAAACCGGCGGTGACGGAAACGGTTTCATATATCTCCACGGCGACCTCGACTTAACAATCGTAGCCGCTCGCCGGTTACCTAACATGGATATCGTTTCAGAGCGTTTTCGCCGCTGTGTAACCGCTTGCGATACTATTAAATACAGTTCAACTTCCGATGCCGCCGACGGTTCTAGTCATCGGAATCATCGTCACCGGAGAAAAATCATAACGAGTGATCCGTATGTAGCCGTTACGGTGCCGCAAGCAACAGTTGCACGGACACGTGTGCTTAAGAACTCGCCGGATCCTGAGTGGAAGGAACGGTTTAACATTCCGTTAGCGCATGCGGTTGTTGATTTGGAATTTCGTGTTAAAGACGACGACGTTTTTGGTGCTCAAACTATAGGGACAGTTAAGATTCCGGCGCAGAGAATTGCCTCCGGCGAGTTAATTTCCGATTGGTTTCCGCTTATCGGAGCCAATGGGAAACCGCCGAAGCCGGACACTGCACTTAATTTAGAAATGAAGTTCACGCCAGTGGACCAGAATCCGCTATACCTTCGTGGCATCGCGGCTGATCCAGAACACAAAGGCGTGAGACATACTTATTTTCCGGTGCGGAAGGGTAGCTCTGTGAGGCTTTACCAGGATGCACATTGTCCAGACGGAATGATACCGGAGATTAAGCTTGACGGTGGAAAGGTTTATAAATCGGAGAACTGTTGGGAAGATATATGTTATGCTATAACAGAAGCTCATCACATGATTTATATAGTGGGTTGGTCAATCTACCATAAGATTAAGCTTGTTAGGGAACCTTCTAGACCGTTGCCGGCGGGTGGCGATTTAACACTTGGTGATTTGCTTAAGTATAAGTCTGAAGAAGGTGTGAGAGTTTTATTGCTTGTTTGGGATGATAAAACTTCCCATGATAAGGTTTTCTTTAAGACGACTGGAGTAATGGAGACTCATGATGAGGAAACTAGGAAGTTTTTCAAGCATTCTTCTGTCATGTGCGTTTTGGCGCCTCGCTATGCTAGCAGTAAGATGAGCTTCTTTAAGCAACAGGTTGTTGGAACCGTTTTCACACACCACCAAAAATGTGTTATTTTGGATTCACAGGCTGCTGGTAATAACAGAAAGATTACCACTTTTATAGGAGGTCTTGATATGTGTGATGGTCGTTATGATACACCTGAGCATCGGCTTTTTCGTGACCTTGATACTGTATTTGCCGGTGATTTCCATAATCCTACGTTTCCGTCTGGAACAAGGGCTCCTAGACAACCGTGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATATTCTTATTAATTTTGAACAGCGATGGAGAAAATCAACCAAGTGGAAAGAGTTTGCAATTCTTTTCAAAAAAGCATCTCAGTGGAATGATGATGCTTTAATAAGAGTAGAACGCATCTCGTGGATATTAAGTCCTTCTAATCCTCCCTCAAAGAATCATTTTACAACTATTCCAGAGGACGATCCTTTGGTATGGGTTTCCAGGGAAGATGATCCTGAAAACTGGCATGTCCAGATCTTCCGCTCCATTGACTCAGGATCCTTGAAAGGATTCCCCAAACGTTTTGAAGATGCTCTATCCCAGAATCTCATATGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGGATACATCCAAGCTATCAGATCTGCTCAACATTTCATTTATATTGAAAACCAATATTTCATTGGATCTTCATATGCATGGCCATCTTACAAAGATGCAGGGGCTGATAATCTTATCCCAATGGAGTTAGCACTGAAAATTGCTAGTAAAATTAAAGCTAATGAGAGATTTGCTATTTATATTGTTATACCAATGTGGCCAGAAGGTGATCCTAAATCTGGAGCTGTGCAAGAAATCCTTTTCTGGCAGGGTCAGACAATGCAAATGATGTATAATGTTGTTGCTAACGCATTGAAATCAATGCAACTTAGTGATGTGCACCCACAAGATTACCTCAATTTCTATTGCCTTGGTAATCGGGAACACTTCAATGAAGAAAGCTCAGGCTCAAATGGTGCTCCGATATCTGGAGCATATAAATACCATCGAAATATGATTTATGTGCATGCCAAGGGGATGATCGTGGATGATGAATATGTTATAGTGGGATCTGCTAACATAAACCAAAGATCTATGGCTGGTACAAAAGATACCGAGATAGCTATGGGTTCATATCAACCCCATCACACATGGTCTGCGAGGAAAAAACATCCACATGGCCAGATTTATGGTTACAGAATGTCACTTTGGGCAGAGCATCTTGACATGTTAGATGAAACTTTTAAAGAACCAGAGAGATTGGAGTGTGTGCGTAAAGTGAATGACATTGCAAACAATAATTGGAGACTTTACGCTTCTGAAGAAATGTCACTGCTACAGGGACATCTTCTTAAGTATCCTGTACAGATAGATTCTGATGGCCAGATCAGCTCATTACCTGATTGTGAGAATTTCCCAGATGCTGGTGGGAAGATATTGGGTGCTCATTCCGCGACAATTCCGGATATCTTAACAACATAA 2574 0.4258 MAETGGDGNGFIYLHGDLDLTIVAARRLPNMDIVSERFRRCVTACDTIKYSSTSDAADGSSHRNHRHRRKIITSDPYVAVTVPQATVARTRVLKNSPDPEWKERFNIPLAHAVVDLEFRVKDDDVFGAQTIGTVKIPAQRIASGELISDWFPLIGANGKPPKPDTALNLEMKFTPVDQNPLYLRGIAADPEHKGVRHTYFPVRKGSSVRLYQDAHCPDGMIPEIKLDGGKVYKSENCWEDICYAITEAHHMIYIVGWSIYHKIKLVREPSRPLPAGGDLTLGDLLKYKSEEGVRVLLLVWDDKTSHDKVFFKTTGVMETHDEETRKFFKHSSVMCVLAPRYASSKMSFFKQQVVGTVFTHHQKCVILDSQAAGNNRKITTFIGGLDMCDGRYDTPEHRLFRDLDTVFAGDFHNPTFPSGTRAPRQPWHDLHCRIDGPAAYDILINFEQRWRKSTKWKEFAILFKKASQWNDDALIRVERISWILSPSNPPSKNHFTTIPEDDPLVWVSREDDPENWHVQIFRSIDSGSLKGFPKRFEDALSQNLICAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIKANERFAIYIVIPMWPEGDPKSGAVQEILFWQGQTMQMMYNVVANALKSMQLSDVHPQDYLNFYCLGNREHFNEESSGSNGAPISGAYKYHRNMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGSYQPHHTWSARKKHPHGQIYGYRMSLWAEHLDMLDETFKEPERLECVRKVNDIANNNWRLYASEEMSLLQGHLLKYPVQIDSDGQISSLPDCENFPDAGGKILGAHSATIPDILTT 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01296 857 PIRSF PLD_plant 5 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre10g01296 857 Pfam Phospholipase D C terminal 776 846 IPR024632 -
Trre10g01296 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 176 IPR035892 -
Trre10g01296 857 SUPERFAMILY Phospholipase D/nuclease 553 786 - -
Trre10g01296 857 Gene3D C2 domain 14 185 IPR035892 -
Trre10g01296 857 Pfam Phospholipase D Active site motif 702 729 IPR001736 GO:0003824
Trre10g01296 857 Pfam Phospholipase D Active site motif 356 391 IPR001736 GO:0003824
Trre10g01296 857 Pfam C2 domain 16 153 IPR000008 -
Trre10g01296 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 356 391 IPR001736 GO:0003824
Trre10g01296 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Trre10g01296 857 Gene3D Endonuclease Chain A 531 751 - -
Trre10g01296 857 PANTHER PHOSPHOLIPASE D 12 845 IPR015679 -
Trre10g01296 857 FunFam Phospholipase D delta 228 472 - -
Trre10g01296 857 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Trre10g01296 857 SUPERFAMILY Phospholipase D/nuclease 199 462 - -
Trre10g01296 857 SMART C2_3c 17 150 IPR000008 -
Trre10g01296 857 SMART pld_4 702 729 IPR001736 GO:0003824
Trre10g01296 857 SMART pld_4 356 391 IPR001736 GO:0003824
Trre10g01296 857 CDD C2_plant_PLD 12 174 - -
Trre10g01296 857 Gene3D Endonuclease Chain A 225 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01296 Trre-Chr10 10688704 10695584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01296 12 693 Phospholipase D Gene Family (Wang group) AT4G35790 71.179 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01296 K01115 - gmx:100801787 1499.95