Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01290 ATGGCTAGCAACAATAAGGAGAAGGAGAAAGACATTGAGTTTATGTTTATCGATGATGATGTTGAGGAAGGTGATCAACCTGAGAAGATAGAGAGTGAGAGTAACAGTGAAAGTGGTGATGGCAGTGATGATGATGATGAGGGAAATCATAGGGATCAACCTCAATCTTTCACTTCTCAGATATGGCCTCAAAGTTACAAGGAGACTACAGATTCTTACACAATTGCTACAGCTCCAACTTTTGGGTCAATGCTAAAAGGACCAAGTTTTATTTATTCAAGTTTTACCAATCGTTCAAAGAGTAACTTAGAAATAGATGGAAAGACTCCTTTTCTATCACCAGGTCTTGATCAAGGCACTGTTCAAACAACAACATGGTGGGAGAAAGGTTCAATGCAAAATCTTGTTGGAGAAATGCCTATTGGTTATGGTTGCAGCCTCACTCAAACAGTTTTCAATGCGATTAATGTGATGGCTGGAGTGGGACTTTTGTCTACACCTTATACGGTGAAAGAAGCCGGCTGGGCGGGCATGGTGGTGATGCTTATTTTTGCAGGTGTTTGTTGTTATACAGCCACCCTTATGAAACGCTGCTTTGAAAGCCGAGAAGGACTCACTAGCTATCCAGATATAGGAGAAGCTGCATTCGGTAGATATGGCCGTATTTTTGTTTCAATCATTTTGTACACTGAATTATATTCATATTGTGTGGAATTCATCACCTTGGAAGGAGATAACCTGACTGGTCTGTTTCCGGGAACATCCTTAGATTTAGGTGGTCTCCATTTGGATTCCACGCACTTGTTTGGAATTCTGACTGCACTTATTATTCTCCCTACTGTTTGGTTGAAGGATCTCCGAATAATCTCGTATCTATCAGTTGGAGGGATTATAGCGACAATATTGATTATCATTTGTGTGTTCTCTGTCGGGACAACTGTTGGATTCCATCATACTGGTCAAGTGGTGAATTGGAGTGGCATTCCGTTTTCTATCGGTGTCTATGGATTCTGCTTTGCAGGACATTCGGTCTTTCCAAATATATACCAGTCTATGGCCGACAAAAAACAATATACAAAAGCATTGATAATATGTTTTGTTTTGTGTATTTTGATATATGGAAGCGTCGCAGTCATGGGATTTCTCATGTTCGGTGATGGAACTTTGTCTCAGATAACATTGAATATGCCGACAGGTGCATTTGCTTCCAAAGTCGCGTTGTGGACAACAGTTGATTTTTCCTTAACAATTAATACATATGCTTTGTTGATGAATCCACTCGCAAGGAGTCTAGAAGAATTGCTGCCAGAGAGAGTTTCAAGTACTTATTGGTGTTTCATTCTTCTTAGAACAGCACTTGTTGCATCTACAGTTTGTGCTGCTTTTCTGATTCCGTTTTTTGGTCTTGTGATGGCTTTGATCGGTTCTCTCTTCAGTATGCTTGTGTCAGTGATAATGCCTAGTTTATGCTTTTTAAAAATTGTGGGGAAAAAGGCTACAAAGACACAGGTTATCGCGAGCGTTGTAATTGCTGCAGCTGGAATCATTTGTGGATTCATTGGATCATATTCCTCTTTGATGAATATTGCTGATAGTTACTAA 1602 0.3989 MASNNKEKEKDIEFMFIDDDVEEGDQPEKIESESNSESGDGSDDDDEGNHRDQPQSFTSQIWPQSYKETTDSYTIATAPTFGSMLKGPSFIYSSFTNRSKSNLEIDGKTPFLSPGLDQGTVQTTTWWEKGSMQNLVGEMPIGYGCSLTQTVFNAINVMAGVGLLSTPYTVKEAGWAGMVVMLIFAGVCCYTATLMKRCFESREGLTSYPDIGEAAFGRYGRIFVSIILYTELYSYCVEFITLEGDNLTGLFPGTSLDLGGLHLDSTHLFGILTALIILPTVWLKDLRIISYLSVGGIIATILIIICVFSVGTTVGFHHTGQVVNWSGIPFSIGVYGFCFAGHSVFPNIYQSMADKKQYTKALIICFVLCILIYGSVAVMGFLMFGDGTLSQITLNMPTGAFASKVALWTTVDFSLTINTYALLMNPLARSLEELLPERVSSTYWCFILLRTALVASTVCAAFLIPFFGLVMALIGSLFSMLVSVIMPSLCFLKIVGKKATKTQVIASVVIAAAGIICGFIGSYSSLMNIADSY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01290 533 Pfam Transmembrane amino acid transporter protein 146 524 IPR013057 -
Trre10g01290 533 PANTHER OS05G0424000 PROTEIN-RELATED 151 513 - -
Trre10g01290 533 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g01290 533 MobiDBLite consensus disorder prediction 1 63 - -
Trre10g01290 533 Gene3D Amino acid/polyamine transporter I 144 531 - -
Trre10g01290 533 FunFam Amino acid transporter AVT1A 143 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01290 Trre-Chr10 10640405 10644760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01290 3 468 Amino Acid or Auxin Permease AAAP Family AT2G41190 63.368 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01290 K15015 - gmx:100790344 796.193