Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01285 ATGGATTTTGTACCAAATCCTTGTCCTTCTCGTTCATCTTTGTTCGGTTCCTTTGGTAATCTTGTTGACAAGGTTAAACAATTTGGTACCCTTGCAATTTCTGCTATCATTGGGAACATTTTCTCTGCGATCTTGACCTTTTGCTTTGCATTAGTGGGGACGTTATTGGGAGCTATGACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTCGAGGTGCCGCCGTTGGTGCTATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATATTTGATTGATGTTATTGCTAGCTTGTTGAGTGGGAGACTTGTGCGTGAGAGGATCGGTCCTGCCATGTTGAGTGCAGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGTGGTTCCAAAGGGTTGTCCGTAGATTCGGTTGCGAAAATCCCAAAAATTAAAATCACCACTGACAATATCGATGCATCAGAGGAGAAAGTTTCTTGTTCAGTTTGTCTACAGGACTTTCAACTTGGAGAGACAGTTAGAAGTTTACCTCATTGTCATCACATGTTTCACCTCCCTTGCATAGATATGTGGCTCTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTGA 705 0.4156 MDFVPNPCPSRSSLFGSFGNLVDKVKQFGTLAISAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSVDSVAKIPKIKITTDNIDASEEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01285 234 CDD RING-H2_NIPL1-like 188 231 - -
Trre10g01285 234 Pfam Ring finger domain 188 231 IPR001841 -
Trre10g01285 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Trre10g01285 234 SMART ring_2 189 230 IPR001841 -
Trre10g01285 234 FunFam NEP1-interacting protein-like 1 150 234 - -
Trre10g01285 234 SUPERFAMILY RING/U-box 181 234 - -
Trre10g01285 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Trre10g01285 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 233 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01285 Trre-Chr10 10602608 10604304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01285 20 234 C3H Transcription Factor Family AT5G66070 76.279 8.51e-117 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01285 - - lja:Lj2g3v1670720.1 420.239