Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01273 ATGACACTCAAAAGCTTTGTATCACTTGTCTTCAATTTAATTGGCCTAGAAGATTCACAAACAAACAAGGATGCAACTATACCTTCTTACATTGTTGCTACCTCAATTGTTCCAAAGAAGATCAATCAACAATCATCAGAATCTATGGAGAAAAATCATGATGTTGGTTTATGTTGTGTGTGTTTGTCAATGTTAAACAACAAAGATGAAATTCGTGTACTTCCTTGTTTGCATGAATTTCATGAAGTTTGTGTAAATAGTTGGCTAAATGGTCATAAAAAAACATGTCCATTATGTCGTTTTTCAATGGGAGCTGAAGAAAAGTCTCATCATGCTGAAATGTTCAGTGATGAGATGCTAATATGGTTTTCTTCTTTCCATATAACTGGTATGTAA 396 0.3308 MTLKSFVSLVFNLIGLEDSQTNKDATIPSYIVATSIVPKKINQQSSESMEKNHDVGLCCVCLSMLNNKDEIRVLPCLHEFHEVCVNSWLNGHKKTCPLCRFSMGAEEKSHHAEMFSDEMLIWFSSFHITGM 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01273 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 107 IPR013083 -
Trre10g01273 131 PANTHER TARGET OF ERK KINASE MPK-1 40 108 - -
Trre10g01273 131 Pfam Ring finger domain 58 100 IPR001841 -
Trre10g01273 131 SMART ring_2 58 99 IPR001841 -
Trre10g01273 131 ProSiteProfiles Zinc finger RING-type profile. 58 100 IPR001841 -
Trre10g01273 131 SUPERFAMILY RING/U-box 37 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01273 Trre-Chr10 10460289 10460684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01273 25 100 C3H Transcription Factor Family AT5G45290 36.364 3.51e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01273 - - gmx:100809233 172.17