Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01240 ATGGCTGTTTGGGCGAACATGTTACCTCATTGTATGGCGTTTCTTCTTCTACTTTTTTTCATGTATAGATCAGGAGCAAAGATTGTCACAATTGATGTGCGAGCAGCCAAGAATCTCATCCAAACCGATCACATTTATATCGATGTTAGGACGGTGAAAGAGTTTGCGAAAGGCAGGGTGAAGAACCCAAATTTTCTAAAGGAGTTTTCATTTGTTTGCAATAAAGAAGATCTTCTCGTCGTGGGTTGCCAAAGTGGGGTTAGATCTTTGTATGCAACTTCTGATCTTCTATCTGATGGTTTTAAGAATGTGAAGGACATGGGAGGAGGTTATGTGGACTGGGTTAGAAACAAGTTTCCAATTAATACATCAGTACGTAGCCAAAGAAGAACTATAATAAGTTCTTATTCATATGATTATCCATCTTTTGTTTCTAAATTTCTTCATCATTGA 453 0.3753 MAVWANMLPHCMAFLLLLFFMYRSGAKIVTIDVRAAKNLIQTDHIYIDVRTVKEFAKGRVKNPNFLKEFSFVCNKEDLLVVGCQSGVRSLYATSDLLSDGFKNVKDMGGGYVDWVRNKFPINTSVRSQRRTIISSYSYDYPSFVSKFLHH 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01240 150 CDD RHOD 35 115 - -
Trre10g01240 150 PANTHER THIOSULFATE SULFURTRANSFERASE 18 57 125 IPR044684 GO:0003824
Trre10g01240 150 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 12 123 IPR036873 -
Trre10g01240 150 Gene3D - 21 122 IPR036873 -
Trre10g01240 150 SMART rhod_4 31 120 IPR001763 -
Trre10g01240 150 ProSiteProfiles Rhodanese domain profile. 40 123 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01240 Trre-Chr10 10194327 10195479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01240 27 123 Sulfurtransferasese or Rhodanese AT5G66170 43.966 7.08e-31 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01240 - K15692 gmx:100803436 173.711