Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01212 ATGATCTCTTCCGTATCTCTCCCTTCTGTATCTCTCTACGCCGCTAACTTCTCCGGCAACACCGTAACACCACCGCCGTGCCGTGTCAGATCTAAACCTTTTGTAATCTCTGCTAGCGCTACAGCCACCGCTGAACCTCGTTCTACATGGACTGAACAACAACAACAACAACAACAACAGAGAACTTCTTATTTGAACATGAACACGAACTCGATCTGTTCTCCTTCATCGCTTTACGAGATCTTAGGTATATCAGCAGGTGCATCGGTTCAAGAAATTAAATCGGCTTACCGACGACTTGCGAGAGTCTGTCATCCTGATGTGGCGGCGATTGACCGGAAAAATTCTTCGGCTGATGATTTTATGAAGATTCATTCTGCTTATTCTACTCTCTCGGATCCTGAAAAACGTGCTAATTATGATCGGAGTCTTTTCCGACGACAACAACGGCCTTTGTCGACGATGATGTCTTCTGGCTACTCGAGCCGGAAATGGGAAACGGATCAGTGTTGGTAG 516 0.4632 MISSVSLPSVSLYAANFSGNTVTPPPCRVRSKPFVISASATATAEPRSTWTEQQQQQQQQRTSYLNMNTNSICSPSSLYEILGISAGASVQEIKSAYRRLARVCHPDVAAIDRKNSSADDFMKIHSAYSTLSDPEKRANYDRSLFRRQQRPLSTMMSSGYSSRKWETDQCW 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01212 171 Pfam DnaJ domain 78 141 IPR001623 -
Trre10g01212 171 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 12 154 - -
Trre10g01212 171 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Trre10g01212 171 ProSiteProfiles dnaJ domain profile. 77 144 IPR001623 -
Trre10g01212 171 SUPERFAMILY Chaperone J-domain 42 140 IPR036869 -
Trre10g01212 171 SMART dnaj_3 76 136 IPR001623 -
Trre10g01212 171 PRINTS DnaJ domain signature 97 112 IPR001623 -
Trre10g01212 171 PRINTS DnaJ domain signature 116 136 IPR001623 -
Trre10g01212 171 PRINTS DnaJ domain signature 79 97 IPR001623 -
Trre10g01212 171 CDD DnaJ 79 133 IPR001623 -
Trre10g01212 171 Gene3D DnaJ domain 62 165 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01212 Trre-Chr10 9873344 9873859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01212 67 141 C2H2 Transcription Factor Family AT1G74250 41.772 9.42e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01212 - - gmx:100800959 222.631