Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01196 ATGGAACAACCTCAACAAAACCAACAAAATGAGGAAGCAGGTGGAGGTGGCAGTAGTGGAAAAGGGGGGTATATGAGTAGCAGACAAAGTAGTACAAGATGGACACCAACAACAGATCAAATAAGAATATTGAAAGATCTTTACTACAACAATGGAATAAGATCACCAAGTGCAGAACAAATTCAGAGGATCTCTGCTAGATTAAGACAGTATGGTAAGATTGAAGGCAAAAATGTCTTTTATTGGTTTCAAAATCATAAAGCTAGAGAAAGACAGAAGAAAAGATTCACTTCTGATGTTAACAATGTTGTTCTTCCTACCATTCAAAGATCAACACCAAATAACAACAATGTTATTTCTTCTGCTAATTGGAAACTAGTACCTGATCATGATCAGAATCAGCCTATTAATTTTCATACCAACATTTCATCTGCTGGGCTTTCTACTGCTTCATGTTCTTCTGCTGAAATGGTTACTGTAGGCCAGATTGGAAATTATGGATATGGATCTGTGCCAATGGAGAAAAGTTTTAGGGAGTGCACAATATCAGCTGGATGTAGTAGTAGTCAAGTTGGAAGCACCATAAACAATCACTTAGGATGGATTGGTCATCATGTTGATCCATATTCTTCAACTAATTATGCAAATTTATTTGGAAAAATAAAACCAAATGAAGAAATGATGGAAGAAGAAGAAGAACAAGAACATGAAATTGAAACTCTTCCTTTATTTCCTATGCATGGTGAAGAAATTAATCATGGTGGTTATTGTAACCTAAAATCAAATTCATCTAACTATGGTGCTGCTGCTGCTGCTTATGGTTGGTATCAAGCTGAAAATCATGGTTTCATCAATACTACTTCCTTGGAACTTAGCCTCAACACTTACACTCGTAGATCACCTGATTATGCTAATTGA 918 0.3584 MEQPQQNQQNEEAGGGGSSGKGGYMSSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVNNVVLPTIQRSTPNNNNVISSANWKLVPDHDQNQPINFHTNISSAGLSTASCSSAEMVTVGQIGNYGYGSVPMEKSFRECTISAGCSSSQVGSTINNHLGWIGHHVDPYSSTNYANLFGKIKPNEEMMEEEEEQEHEIETLPLFPMHGEEINHGGYCNLKSNSSNYGAAAAAYGWYQAENHGFINTTSLELSLNTYTRRSPDYAN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01196 305 MobiDBLite consensus disorder prediction 1 37 - -
Trre10g01196 305 CDD homeodomain 32 94 IPR001356 GO:0003677
Trre10g01196 305 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g01196 305 Pfam Homeodomain 31 92 IPR001356 GO:0003677
Trre10g01196 305 Gene3D - 24 92 - -
Trre10g01196 305 MobiDBLite consensus disorder prediction 22 37 - -
Trre10g01196 305 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 266 IPR044555 GO:0003700|GO:0099402
Trre10g01196 305 SUPERFAMILY Homeodomain-like 24 98 IPR009057 -
Trre10g01196 305 ProSiteProfiles 'Homeobox' domain profile. 27 93 IPR001356 GO:0003677
Trre10g01196 305 SMART HOX_1 29 97 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01196 Trre-Chr10 9711152 9712776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01196 26 255 Wox Gene Family AT2G17950 43.182 5.21e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre10g01196 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01196 - - gmx:100803815 329.717