Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01181 ATGGGTAGGGTTATCAGGGCACAACGTAAGGGAGCAGGTTCAATTTTCAAATCTCACACACACCACCGTAAAGGACCAGCACGTTTCCGAAGTCTTGATTTCGGTGAAAGAAATGGTTACCTTAAAGGAGTAGTAACAGACATAATTCATGATCCTGGTCGTGGTGCACCACTTGCTAAGGTTACTTTTAGACATCCATTTAGGTATAAGAAACAGAATGAATTATTTGTTGCTGCTGAAGGACTTTATACTGGACAGTTTATTTATTGTGGGAAAAAAGCTACACTTGTTGTTGGTAATGTTTTGCCAATAAGATCTATTCCTGAAGGTGCTGTTATTTGTAATGTTGAACATCATGTTGGTGATCGTGGTGCTTTTGCTAGATGTTCTGGTGATTATGCTATTGTTATTAGTCATAATCCTGATAATGATACTTCTAGGGTTAAGCTACCATCTGGTGCAAAGAAGATTATTCCGAGTGGTTGCAGGGCTATGATCGGACAAGTTGCAGGTGGAGGAAGAACTGAAAAGCCACTTCTCAAGGCCGGTAATGCTTACCACAAATTTAGAGTGAAGAGGAATTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAACATCCACACGGAGGAGGTAACCACCAACATATTGGACATGCTAGTACTGTTAGGCGTGATGCTCCTCCTGGACAAAAGGTTGGTCTCATTGCCGCTAAGAGAACAGGTCGTCTTAGAGGACAAGCTGCTGCAACTGCTGCTAAGGCCGATAATTGA 780 0.4256 MGRVIRAQRKGAGSIFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01181 259 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trre10g01181 259 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre10g01181 259 Pfam Ribosomal Proteins L2, RNA binding domain 14 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Trre10g01181 259 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Trre10g01181 259 Gene3D - 90 169 IPR014722 -
Trre10g01181 259 FunFam 60S ribosomal protein L8 90 169 - -
Trre10g01181 259 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Trre10g01181 259 FunFam 60S ribosomal protein L2 1 86 - -
Trre10g01181 259 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Trre10g01181 259 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Trre10g01181 259 PANTHER RIBOSOMAL PROTEIN L2 2 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trre10g01181 259 MobiDBLite consensus disorder prediction 210 230 - -
Trre10g01181 259 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre10g01181 259 Gene3D - 1 86 IPR012340 -
Trre10g01181 259 FunFam 60S ribosomal protein L2 170 247 - -
Trre10g01181 259 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01181 Trre-Chr10 9537337 9538695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01181 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 91.473 0.0 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01181 K02938 - mnt:21409345 527.324