Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01178 ATGTCTGCTACCGGAGAAGTTGTTGATATTTCTCCCGCCGTGGAACAACCGCCGGAGGTGGTGAAAGCGGCGGAGGAACCTAAACCTGTGAAGGAAAAGAAGCCAAAAGCATCAAAAGAGAAGAAAACTAAACAGACTAAAACAGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGTTGGCTCTGAAGGAGAAAAACGGTTCAAGTCCTTACGCTATAGCAAAATTCATGGAGGAGAAGTTTAAGTCGGTGCTTCCGGCGAATTTCAAGAAGATGTTGAATCTGCAGTTGAAGAATCAAGCTGCGAGAGGGAAGCTTGTGAAGATTAAGGCTTCTTATAAACTATCTGAAGTTGAGAAGCCGAAGAAGGAGAAAAAGGGCACGAAGGTTACGAAGGGTGACGTTGCAGAGAAGCAACAGAGCCAGAAGAGGAAGAGAAATGTTACGGTTGGTGGTACGAAGAGTAAGAAAAATGAGGCGGTTAAGAAGGTTGTGAAGAAAAAGAAGAGTAAGAAGGTATCTGGGCCTGCGAAGCCCAAACAGCCCAAGTCCATTAAGAGGGCTAGAAAAGCTACTGTTGCTAATGCTTGA 600 0.445 MSATGEVVDISPAVEQPPEVVKAAEEPKPVKEKKPKASKEKKTKQTKTASHPPYFQMIKEALLALKEKNGSSPYAIAKFMEEKFKSVLPANFKKMLNLQLKNQAARGKLVKIKASYKLSEVEKPKKEKKGTKVTKGDVAEKQQSQKRKRNVTVGGTKSKKNEAVKKVVKKKKSKKVSGPAKPKQPKSIKRARKATVANA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01178 199 Pfam linker histone H1 and H5 family 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre10g01178 199 MobiDBLite consensus disorder prediction 163 190 - -
Trre10g01178 199 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre10g01178 199 PRINTS Histone H5 signature 64 81 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre10g01178 199 PRINTS Histone H5 signature 37 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre10g01178 199 PRINTS Histone H5 signature 135 149 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre10g01178 199 PRINTS Histone H5 signature 174 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre10g01178 199 SUPERFAMILY "Winged helix" DNA-binding domain 47 129 IPR036390 -
Trre10g01178 199 MobiDBLite consensus disorder prediction 21 36 - -
Trre10g01178 199 MobiDBLite consensus disorder prediction 116 199 - -
Trre10g01178 199 MobiDBLite consensus disorder prediction 1 53 - -
Trre10g01178 199 Gene3D - 44 133 IPR036388 -
Trre10g01178 199 MobiDBLite consensus disorder prediction 116 147 - -
Trre10g01178 199 PANTHER HISTONE H1 23 181 - -
Trre10g01178 199 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre10g01178 199 CDD H15 49 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01178 Trre-Chr10 9516340 9517030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01178 48 118 Single Myb Histone (SMH) Gene Family AT1G72740 39.437 5.87e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01178 K11275 - gmx:100500169 171.014