Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01177 ATGGAGTCCATGGAGTCATGTGTCCCACCAGGCTTTCGCTTCCATCCAACCGATGAAGAACTAGTTGGTTATTATCTCAGAAAGAAAATCGCTTCTCAAAAAATCGATCTCGATGTTATCAGAGAGATCGATCTTTATCGTATCGAACCATGGGATCTTCAAGAGAGATGCAGGATTGGATATGAAGAGCAGAATGAGTGGTATTTTTTCAGTCACAAAGATAAAAAGTATCCAACTGGAACAAGAACTAATAGAGCTACCATGGCTGGATTTTGGAAAGCTACAGGAAGAGATAAAGCAGTTTATGACAAGATGAAACTAATTGGAATGAGGAAGACTCTTGTTTTCTATAAAGGAAGAGCACCTAATGGACAAAAATCTGATTGGATCATGCATGAGTATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAAGAAGGATGGGTTGTTTGTAGAGCATTTAAGAAAAGAACAACAAATAGCCAAAGTACAAAAAGAACAATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTCCAAGTGGTATCAACAATTCAATGGTGGATCCAATTGAGTTAATCTCAAGACAACAACCTCAAAACTATTTATCTCAAACTTACAATATGTGTAAGCAAGAGATAGAAGCATGCATGCATGCAGAACAATTTGTACAGCTTCCTCAACTTGAAAGTCCTTCATTGCCATTATTAGTAAAGAGACCAAGCACAATGTCTCTAGTATCATCCGAAATTAATAACGACGAAATTGATGACCAAAATAGGTTATTATTATTATCTAACAATAATAATAATAATACTACTACTACTACAACTACAAATAATGTGACTGATTGGAGAGCACTTGATAAATTTGTGGCTTCTCAACTAAGTCATGAAGTTGAAACTGATCAAGGAGTGTTATTGTCAAGTTTTGGTGCAACAAATAATAATCATAACTCAGATATGGCATTGATGTTACTTCAACAAGCTAGTAGGGATGAAGGGAACAAGTTAAGTCCTTTTTTGAATGGAAGTTCAGATTGCAGTGATATTGGGATATGCATATTTGAAAAATGA 1083 0.3592 MESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKRTIEGWDTSYFYEEAPSGINNSMVDPIELISRQQPQNYLSQTYNMCKQEIEACMHAEQFVQLPQLESPSLPLLVKRPSTMSLVSSEINNDEIDDQNRLLLLSNNNNNNTTTTTTTNNVTDWRALDKFVASQLSHEVETDQGVLLSSFGATNNNHNSDMALMLLQQASRDEGNKLSPFLNGSSDCSDIGICIFEK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01177 360 ProSiteProfiles NAC domain profile. 8 157 IPR003441 GO:0003677|GO:0006355
Trre10g01177 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 269 - -
Trre10g01177 360 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Trre10g01177 360 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Trre10g01177 360 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Trre10g01177 360 FunFam NAC domain-containing protein 17 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01177 Trre-Chr10 9495662 9498495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01177 1 359 NAC Transcription Factor Family AT2G18060 61.111 6.12e-152 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g01177 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01177 - - aprc:113869508 520.005