Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g01170 | ATGCATACTTTTCTCTTCATATTGTTACTCTGCGCACCATTCTTATCCTACGCCGATAACAGTAACACAACCGTAACAGAGATCCAAGCTTTAACGTCGTTTAAGCTAAACCTCCATGATCCTCTCGGAGCACTTGACGGTTGGGATCCATCTTCACCGGAAGCACCGTGTGACTGGCGCGGCGTTGCTTGTAACAATGACCGAGTTACTGAGCTTCGTTTGCCTCGTCTTCAACTCGGTGGTAGACTCAGTGAACGTCTTTCAGAGTTACGCATGTTAAGGAAACTAAGTCTTCGTTCGAATTTCTTCAACGGAACGATTCCGAGAGCGTTAATGAAATGTAAGCTACTTCGGTTTTTGTTCTTACAGGATAATGTGTTTTCCGGTGAGATTCCGCCGGAGATCGGGAACCTTACCGGTCTTAAGATTCTCAATGTTGCTCAGAATAATCTATCTGGAACTGTTCCGGCAGAGCTTCCGATTGGTTTGAAGTATCTTGACTTATCGTCGAATGCTTTCTCCGGTGAGATTCCGAGTACCGTTGGTAATCTCTCTCTTCTTCAGCTTATCAACCTTTCGTATAATCATTTCTCCGGTGAGATTCCGGCGACGTTCGGGGAGCTTCAGAATCTGCAATATCTATGGCTTGATCATAATTTTCTTGGAGGAACTTTACCTTCTGCACTTGCTAATTGTTCTTCGCTTGTGCATCTGAGTGCAGAGGGAAATTCACTCGGCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGATGCTTCAAGTGATGTCTCTTTCTCAGAATAATCTTACTGGTTCAATTCCTGCTTCTGTTTTCTGCAATGTTTCTGTTCACGCGCCGTCGTTGCGGATAGTTCAACTTGGATTCAATGGTTTCACGGATTTCGTTGGAGTTGAAACCAACACGTGTTTCAACGTTCTTCAGGTTTTGGATATTCAAAACAATCACCTAAGAGGCACGTTTCCCTTGTGGTTGACCAATGTAACCACGTTGTCAGTGCTTGATCTTTCGAGCAATGTACTTTCCGGCGAGATTCCGCGGCAGATAGGAAATCTCGCTGGGTTGACGGAGTTGAAGGTGGCTAATAATTCATTCACCGGCATCATTCCGGTGGAAATCAAGAAATGTGGGTCCCTCAGTGTTGTTGATTTTGAAGGCAACAATTTTTCCGGTGAAGTTCCTTCGTTTTTCGGAGATATGAAGGGACTCAAGGTGCTATCTCTTGGTGGAAATCGCTTCTTTGGTTCAGTTCCTGTGAGTTTTGGTAACCTTTCTTCACTTGAAACCTTGAATTTGAGAAGCAATAGATTAAATGGTACTATGCCTGAAATGATAATGAGTTTGAGCAATTTAACAACACTAGACCTTAGTGGTAACAAGTTTACTGGTGTAATTTATGATACTATTGGGAATTTGAATCGATTAACGGTTCTAAATCTGAGTGGTAATGGCTTCTTTGGAAAAATCCCTTCTAGTTTGGGCAATCTTTTCAGGCTAACTACACTTGATTTGAGCAAACAGAATCTCTCTGGAGAGTTACCATTTGAGCTCTCTGGGCTGCCCAATCTGCATGTTATTGCTCTGCAGGAGAACAAGTTGTCTGGTGTAGTGCCTGAAGGTTTCAGCAGTTTGATGAGTTTGCAGTATGTCAATCTTAGTTCTAATGCTTTTTCTGGGCATATTCCTGAGAACTATGGTTTTCTTCGATCGTTGGTTGTTCTTTCATTGTCTCATAATCACATTACAGGAATAATTCCTTCAGGAATTGGAAACAGCTCTGATATTGAAATTCTTGAGCTTGGATCAAATTCATTGGCAGGTCGTATTCCTACGGAGCTTTCTCGCCTAACACATTTGAAAGTTCTTGATTTGGGTGGTAACAAATTAACTGGGGATATGCCTGAAGATATCTCCAAATGTTTGTCATTGACCACATTGTTAGTAGATCACAACAATCTTGCCGGTGCCATACCAGGGTCATTGTCGAATCTGTCAAAGCTAACAATGCTGGATCTCTCTGCTAACAACTTGAGTGGGGAAATTCCTAGTAATTTGTCCATGATCCCTGGTTTGGTCTATTTCAATGTCTCAGGGAACAATTTGGAAGGTGAGATACCGCAAAGTTTGGGATCACGGTTCAACAACCCTGCTGTATTTGCTGATAATCAGGGTTTATGTGGGAAGCCATTGGAATCAAAGTGTGAAGGTACAGACAATAGGGACAAAAAGAGGTTGATTGTGTTGATTATCATTATTGCAGTAGGAGCTTGCATATTAGTCCTATTTTGCTGTTTTTACATCATTGGTTTATGGAGATGGCGCAAGAAGCTCAAAGAAAGGGTTTCTGGGGAGAAGAAAAAGAGTCCTGCAAGAGCAAGTTCGGGAGCAAGTGGAGGCCGTGTCAGCAGTGAAAATGGTGGACCAAAACTCGTGATGTTCAACAGCAAAATCACACTTGCCGAAACAATTGAAGCAACGAGACAATTTGACGAAGAAAATGTACTAAGCAGAACAAGGTTTGGATTAGTATTCAAGGCCTGCTACAATGATGGAATGGTCCTTTCAATTCGCAGGCTCCCTGATGGATCATTGGATGAGAATATGTTCAGAAAAGAAGCTGAATCACTGGGCAAGATAAAGCACAGAAATTTAACCGTTCTCAGAGGCTACTATGCAGGACCACCTGATATGAGACTCTTGGCCTACGATTACATGCCCAACGGAAACCTTGCAACACTCCTCCAAGAAGCTTCTCACCAAGACGGCCATGTTCTAAATTGGCCAATGCGGCACCTCATTGCACTAGGAATCGCCCGAAAGAGACCAGTAATGTTCACACAAGATGAAGACATAGTGAAGTGGGTGAAAAAACAGCTTCAAAGAGGTCAAATTACAGAGCTATTAGAACCTGGTTTACTTGAATTGGATCCAGAATCATCAGAATGGGAAGAGTTTTTATTAGGTGTGAAAGTTGGTTTACTTTGCACAGCACCAGATCCTCTTGATCGACCAACCATGTCCGACATTGTTTTCATGCTCGAAGGTTGTCGTGTTGGTCCCGATATTCCATCCTCAGCTGATCCCACCTCTCATCATTCTCCAGCATAA | 3126 | 0.4299 | MHTFLFILLLCAPFLSYADNSNTTVTEIQALTSFKLNLHDPLGALDGWDPSSPEAPCDWRGVACNNDRVTELRLPRLQLGGRLSERLSELRMLRKLSLRSNFFNGTIPRALMKCKLLRFLFLQDNVFSGEIPPEIGNLTGLKILNVAQNNLSGTVPAELPIGLKYLDLSSNAFSGEIPSTVGNLSLLQLINLSYNHFSGEIPATFGELQNLQYLWLDHNFLGGTLPSALANCSSLVHLSAEGNSLGGVIPSAISALPMLQVMSLSQNNLTGSIPASVFCNVSVHAPSLRIVQLGFNGFTDFVGVETNTCFNVLQVLDIQNNHLRGTFPLWLTNVTTLSVLDLSSNVLSGEIPRQIGNLAGLTELKVANNSFTGIIPVEIKKCGSLSVVDFEGNNFSGEVPSFFGDMKGLKVLSLGGNRFFGSVPVSFGNLSSLETLNLRSNRLNGTMPEMIMSLSNLTTLDLSGNKFTGVIYDTIGNLNRLTVLNLSGNGFFGKIPSSLGNLFRLTTLDLSKQNLSGELPFELSGLPNLHVIALQENKLSGVVPEGFSSLMSLQYVNLSSNAFSGHIPENYGFLRSLVVLSLSHNHITGIIPSGIGNSSDIEILELGSNSLAGRIPTELSRLTHLKVLDLGGNKLTGDMPEDISKCLSLTTLLVDHNNLAGAIPGSLSNLSKLTMLDLSANNLSGEIPSNLSMIPGLVYFNVSGNNLEGEIPQSLGSRFNNPAVFADNQGLCGKPLESKCEGTDNRDKKRLIVLIIIIAVGACILVLFCCFYIIGLWRWRKKLKERVSGEKKKSPARASSGASGGRVSSENGGPKLVMFNSKITLAETIEATRQFDEENVLSRTRFGLVFKACYNDGMVLSIRRLPDGSLDENMFRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSHHSPA | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g01170 | 1041 | Gene3D | Ribonuclease Inhibitor | 351 | 451 | IPR032675 | - | |
| Trre10g01170 | 1041 | Gene3D | Ribonuclease Inhibitor | 243 | 350 | IPR032675 | - | |
| Trre10g01170 | 1041 | Gene3D | Ribonuclease Inhibitor | 24 | 161 | IPR032675 | - | |
| Trre10g01170 | 1041 | Gene3D | Ribonuclease Inhibitor | 162 | 242 | IPR032675 | - | |
| Trre10g01170 | 1041 | SUPERFAMILY | RNI-like | 249 | 564 | - | - | |
| Trre10g01170 | 1041 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 798 | 910 | - | - | |
| Trre10g01170 | 1041 | FunFam | Inactive leucine-rich repeat receptor-like protein kinase | 162 | 251 | - | - | |
| Trre10g01170 | 1041 | SUPERFAMILY | L domain-like | 480 | 736 | - | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 478 | 502 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 90 | 114 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 334 | 358 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 184 | 207 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 406 | 429 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 256 | 280 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 574 | 598 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 430 | 453 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 622 | 646 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 454 | 477 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 526 | 549 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 208 | 232 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 670 | 694 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | LRR_typ_2 | 138 | 162 | IPR003591 | - | |
| Trre10g01170 | 1041 | SMART | tyrkin_6 | 835 | 1019 | IPR020635 | GO:0004713|GO:0006468 | |
| Trre10g01170 | 1041 | FunFam | Piriformospora indica-insensitive protein 2 | 473 | 567 | - | - | |
| Trre10g01170 | 1041 | Pfam | Leucine rich repeat | 504 | 562 | IPR001611 | GO:0005515 | |
| Trre10g01170 | 1041 | Pfam | Leucine rich repeat | 162 | 219 | IPR001611 | GO:0005515 | |
| Trre10g01170 | 1041 | Pfam | Leucine rich repeat | 313 | 370 | IPR001611 | GO:0005515 | |
| Trre10g01170 | 1041 | Pfam | Leucine rich repeat | 432 | 490 | IPR001611 | GO:0005515 | |
| Trre10g01170 | 1041 | Pfam | Leucine rich repeat | 575 | 635 | IPR001611 | GO:0005515 | |
| Trre10g01170 | 1041 | Pfam | Leucine rich repeat | 648 | 707 | IPR001611 | GO:0005515 | |
| Trre10g01170 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 824 | 945 | IPR011009 | - | |
| Trre10g01170 | 1041 | FunFam | Nuclear pore complex protein NUP107 | 24 | 161 | - | - | |
| Trre10g01170 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 807 | 910 | - | - | |
| Trre10g01170 | 1041 | MobiDBLite | consensus disorder prediction | 790 | 813 | - | - | |
| Trre10g01170 | 1041 | SUPERFAMILY | L domain-like | 24 | 346 | - | - | |
| Trre10g01170 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 945 | 1027 | - | - | |
| Trre10g01170 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 835 | 1041 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre10g01170 | 1041 | PRINTS | Leucine-rich repeat signature | 457 | 470 | - | - | |
| Trre10g01170 | 1041 | PRINTS | Leucine-rich repeat signature | 670 | 683 | - | - | |
| Trre10g01170 | 1041 | Gene3D | Ribonuclease Inhibitor | 452 | 744 | IPR032675 | - | |
| Trre10g01170 | 1041 | PANTHER | UNNAMED PRODUCT | 287 | 951 | - | - | |
| Trre10g01170 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 27 | 65 | IPR013210 | - | |
| Trre10g01170 | 1041 | SMART | LRR_sd22_2 | 406 | 432 | - | - | |
| Trre10g01170 | 1041 | SMART | LRR_sd22_2 | 208 | 234 | - | - | |
| Trre10g01170 | 1041 | SMART | LRR_sd22_2 | 622 | 645 | - | - | |
| Trre10g01170 | 1041 | SMART | LRR_sd22_2 | 334 | 360 | - | - | |
| Trre10g01170 | 1041 | SMART | LRR_sd22_2 | 670 | 693 | - | - | |
| Trre10g01170 | 1041 | SMART | LRR_sd22_2 | 454 | 480 | - | - | |
| Trre10g01170 | 1041 | FunFam | Uncharacterized protein | 256 | 472 | - | - | |
| Trre10g01170 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 616 | 740 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g01170 | Trre-Chr10 | 9412321 | 9415710 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre10g01170 | 4 | 945 | Receptor kinase-like Gene Family | AT4G36180 | 65.163 | 0.0 | 1175 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-VII-3 | Trre10g01170 | LRR_8 | 2.6e-08 | CL0022 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre10g01170 | - | - | gmx:100795838 | 1456.81 |