Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01169 ATGCATACTTTTCTCTTCATATTGTTACTCTGCGCACCATTCTTATCCTACGCCGATAACAGTAACACAACCGTAACAGAGATCCAAGCTTTAACGTCGTTTAAGCTAAACCTCCATGATCCTCTCGGAGCACTTGACGGTTGGGATCCATCTTCACCGGAAGCACCGTGTGACTGGCGCGGCGTTGCTTGTAACAATGACCGAGTTACTGAGCTTCGTTTGCCTCGTCTTCAACTCGGTGGTAGACTCAGTGAACGTCTTTCAGAGTTACGCATGTTAAGGAAACTAAGTCTTCGTTCGAATTTCTTCAACGGAACGATTCCGAGAGCGTTAATGAAATGTAAGCTACTTCGGTTTTTGTTCTTACAGGATAATGTGTTTTCCGGTGAGATTCCGCCGGAGATCGGGAACCTTACCGGTCTTAAGATTCTCAATGTTGCTCAGAATAATCTATCTGGAACTGTTCCGGCAGAGCTTCCGATTGGTTTGAAGTATCTTGACTTATCGTCGAATGCTTTCTCCGGTGAGATTCCGAGTACCGTTGGTAATCTCTCTCTTCTTCAGCTTATCAACCTTTCGTATAATCATTTCTCCGGTGAGATTCCGGCGACGTTCGGGGAGCTTCAGAATCTGCAATATCTATGGCTTGATCATAATTTTCTTGGAGGAACTTTACCTTCTGCACTTGCTAATTGTTCTTCGCTTGTGCATCTGAGTGCAGAGGGAAATTCACTCGGCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGATGCTTCAAGTGATGTCTCTTTCTCAGAATAATCTTACTGGTTCAATTCCTGCTTCTGTTTTCTGCAATGTTTCTGTTCACGCGCCGTCGTTGCGGATAGTTCAACTTGGATTCAATGGTTTCACGGATTTCGTTGGAGTTGAAACCAACACGTGTTTCAACGTTCTTCAGGTTTTGGATATTCAAAACAATCACCTAAGAGGCACGTTTCCCTTGTGGTTGACCAATGTAACCACGTTGTCAGTGCTTGATCTTTCGAGCAATGTACTTTCCGGCGAGATTCCGCGGCAGATAGGAAATCTCGCTGGGTTGACGGAGTTGAAGGTGGCTAATAATTCATTCACCGGCATCATTCCGGTGGAAATCAAGAAATGTGGGTCCCTCAGTGTTGTTGATTTTGAAGGCAACAATTTTTCCGGTGAAGTTCCTTCGTTTTTCGGAGATATGAAGGGACTCAAGGTGCTATCTCTTGGTGGAAATCGCTTCTTTGGTTCAGTTCCTGTGAGTTTTGGTAACCTTTCTTCACTTGAAACCTTGAATTTGAGAAGCAATAGATTAAATGGTACTATGCCTGAAATGATAATGAGTTTGAGCAATTTAACAACACTAGACCTTAGTGGTAACAAGTTTACTGGTGTAATTTATGATACTATTGGGAATTTGAATCGATTAACGGTTCTAAATCTGAGTGGTAATGGCTTCTTTGGAAAAATCCCTTCTAGTTTGGGCAATCTTTTCAGGCTAACTACACTTGATTTGAGCAAACAGAATCTCTCTGGAGAGTTACCATTTGAGCTCTCTGGGCTGCCCAATCTGCATGTTATTGCTCTGCAGGAGAACAAGTTGTCTGGTGTAGTGCCTGAAGGTTTCAGCAGTTTGATGAGTTTGCAGTATGTCAATCTTAGTTCTAATGCTTTTTCTGGGCATATTCCTGAGAACTATGGTTTTCTTCGATCGTTGGTTGTTCTTTCATTGTCTCATAATCACATTACAGGAATAATTCCTTCAGGAATTGGAAACAGCTCTGATATTGAAATTCTTGAGCTTGGATCAAATTCATTGGCAGGTCGTATTCCTACGGAGCTTTCTCGCCTAACACATTTGAAAGTTCTTGATTTGGGTGGTAACAAATTAACTGGGGATATGCCTGAAGATATCTCCAAATGTTTGTCATTGACCACATTGTTAGTAGATCACAACAATCTTGCCGGTGCCATACCAGGGTCATTGTCGAATCTGTCAAAGCTAACAATGCTGGATCTCTCTGCTAACAACTTGAGTGGGGAAATTCCTAGTAATTTGTCCATGATCCCTGGTTTGGTCTATTTCAATGTCTCAGGGAACAATTTGGAAGGTGAGATACCGCAAAGTTTGGGATCACGGTTCAACAACCCTGCTGTATTTGCTGATAATCAGGGTTTATGTGGGAAGCCATTGGAATCAAAGTGTGAAGGTACAGACAATAGGGACAAAAAGAGGTTGATTGTGTTGATTATCATTATTGCAGTAGGAGCTTGCATATTAGTCCTATTTTGCTGTTTTTACATCATTGGTTTATGGAGATGGCGCAAGAAGCTCAAAGAAAGGGTTTCTGGGGAGAAGAAAAAGAGTCCTGCAAGAGCAAGTTCGGGAGCAAGTGGAGGCCGTGTCAGCAGTGAAAATGGTGGACCAAAACTCGTGATGTTCAACAGCAAAATCACACTTGCCGAAACAATTGAAGCAACGAGACAATTTGACGAAGAAAATGTACTAAGCAGAACAAGGTTTGGATTAGTATTCAAGGCCTGCTACAATGATGGAATGGTCCTTTCAATTCGCAGGCTCCCTGATGGATCATTGGATGAGAATATGTTCAGAAAAGAAGCTGAATCACTGGGCAAGATAAAGCACAGAAATTTAACCGTTCTCAGAGGCTACTATGCAGGACCACCTGATATGAGACTCTTGGCCTACGATTACATGCCCAACGGAAACCTTGCAACACTCCTCCAAGAAGCTTCTCACCAAGACGGCCATGTTCTAAATTGGCCAATGCGGCACCTCATTGCACTAGGAATCGCCCGTGGGTTAGCCTTCATACACCAATCCACATTGGTCCATGGCGACGTAAAACCTCAAAACGTTCTATTCGACGCAGACTTCGAAGCCCATTTATCAGATTTCGGATTAGAAAGACTAACAGTAGCCACTCAAGGAGATGCAGCCTCCAGTTCAACATCAGTTGGCACATTGGGTTACGTTTCACCCGAAGCAATCTTAACCGGCGAAGTCACAAAGGAATCCGATGTTTACAGTTTTGGCATTGTGTTGTTGGAACTTCTAACAGGAAAGAGACCAGTAATGTTCACACAAGATGAAGACATAGTGAAGTGGGTGAAAAAACAGCTTCAAAGAGGTCAAATTACAGAGCTATTAGAACCTGGTTTACTTGAATTGGATCCAGAATCATCAGAATGGGAAGAGTTTTTATTAGGTGTGAAAGTTGGTTTACTTTGCACAGCACCAGATCCTCTTGATCGACCAACCATGTCCGACATTGTTTTCATGCTCGAAGGTTGTCGTGTTGGTCCCGATATTCCATCCTCAGCTGATCCCACCTCTCATCATTCTCCAGCATAA 3390 0.4316 MHTFLFILLLCAPFLSYADNSNTTVTEIQALTSFKLNLHDPLGALDGWDPSSPEAPCDWRGVACNNDRVTELRLPRLQLGGRLSERLSELRMLRKLSLRSNFFNGTIPRALMKCKLLRFLFLQDNVFSGEIPPEIGNLTGLKILNVAQNNLSGTVPAELPIGLKYLDLSSNAFSGEIPSTVGNLSLLQLINLSYNHFSGEIPATFGELQNLQYLWLDHNFLGGTLPSALANCSSLVHLSAEGNSLGGVIPSAISALPMLQVMSLSQNNLTGSIPASVFCNVSVHAPSLRIVQLGFNGFTDFVGVETNTCFNVLQVLDIQNNHLRGTFPLWLTNVTTLSVLDLSSNVLSGEIPRQIGNLAGLTELKVANNSFTGIIPVEIKKCGSLSVVDFEGNNFSGEVPSFFGDMKGLKVLSLGGNRFFGSVPVSFGNLSSLETLNLRSNRLNGTMPEMIMSLSNLTTLDLSGNKFTGVIYDTIGNLNRLTVLNLSGNGFFGKIPSSLGNLFRLTTLDLSKQNLSGELPFELSGLPNLHVIALQENKLSGVVPEGFSSLMSLQYVNLSSNAFSGHIPENYGFLRSLVVLSLSHNHITGIIPSGIGNSSDIEILELGSNSLAGRIPTELSRLTHLKVLDLGGNKLTGDMPEDISKCLSLTTLLVDHNNLAGAIPGSLSNLSKLTMLDLSANNLSGEIPSNLSMIPGLVYFNVSGNNLEGEIPQSLGSRFNNPAVFADNQGLCGKPLESKCEGTDNRDKKRLIVLIIIIAVGACILVLFCCFYIIGLWRWRKKLKERVSGEKKKSPARASSGASGGRVSSENGGPKLVMFNSKITLAETIEATRQFDEENVLSRTRFGLVFKACYNDGMVLSIRRLPDGSLDENMFRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSTLVHGDVKPQNVLFDADFEAHLSDFGLERLTVATQGDAASSSTSVGTLGYVSPEAILTGEVTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSHHSPA 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01169 1129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 955 967 IPR008271 GO:0004672|GO:0006468
Trre10g01169 1129 SUPERFAMILY Protein kinase-like (PK-like) 816 1117 IPR011009 -
Trre10g01169 1129 ProSiteProfiles Protein kinase domain profile. 835 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01169 1129 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 911 1115 - -
Trre10g01169 1129 FunFam Putative LRR receptor-like serine/threonine-protein kinase 798 910 - -
Trre10g01169 1129 SMART LRR_typ_2 478 502 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 90 114 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 334 358 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 184 207 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 406 429 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 256 280 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 574 598 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 430 453 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 622 646 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 526 549 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 454 477 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 208 232 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 670 694 IPR003591 -
Trre10g01169 1129 SMART LRR_typ_2 138 162 IPR003591 -
Trre10g01169 1129 FunFam Uncharacterized protein 256 472 - -
Trre10g01169 1129 PANTHER UNNAMED PRODUCT 287 1040 - -
Trre10g01169 1129 Pfam Protein kinase domain 845 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01169 1129 SUPERFAMILY L domain-like 309 541 - -
Trre10g01169 1129 SUPERFAMILY L domain-like 477 735 - -
Trre10g01169 1129 Gene3D Ribonuclease Inhibitor 454 744 IPR032675 -
Trre10g01169 1129 MobiDBLite consensus disorder prediction 790 813 - -
Trre10g01169 1129 SUPERFAMILY L domain-like 24 346 - -
Trre10g01169 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 473 567 - -
Trre10g01169 1129 Gene3D Phosphorylase Kinase; domain 1 807 910 - -
Trre10g01169 1129 PRINTS Leucine-rich repeat signature 670 683 - -
Trre10g01169 1129 PRINTS Leucine-rich repeat signature 457 470 - -
Trre10g01169 1129 FunFam Inactive leucine-rich repeat receptor-like protein kinase 161 251 - -
Trre10g01169 1129 Gene3D Ribonuclease Inhibitor 161 453 IPR032675 -
Trre10g01169 1129 Gene3D Transferase(Phosphotransferase) domain 1 911 1115 - -
Trre10g01169 1129 Gene3D Ribonuclease Inhibitor 24 160 IPR032675 -
Trre10g01169 1129 Pfam Leucine rich repeat 575 635 IPR001611 GO:0005515
Trre10g01169 1129 Pfam Leucine rich repeat 162 219 IPR001611 GO:0005515
Trre10g01169 1129 Pfam Leucine rich repeat 313 370 IPR001611 GO:0005515
Trre10g01169 1129 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Trre10g01169 1129 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Trre10g01169 1129 Pfam Leucine rich repeat 432 490 IPR001611 GO:0005515
Trre10g01169 1129 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Trre10g01169 1129 FunFam Nuclear pore complex protein NUP107 24 160 - -
Trre10g01169 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 616 740 - -
Trre10g01169 1129 SMART LRR_sd22_2 406 432 - -
Trre10g01169 1129 SMART LRR_sd22_2 208 234 - -
Trre10g01169 1129 SMART LRR_sd22_2 622 645 - -
Trre10g01169 1129 SMART LRR_sd22_2 334 360 - -
Trre10g01169 1129 SMART LRR_sd22_2 670 693 - -
Trre10g01169 1129 SMART LRR_sd22_2 454 480 - -
Trre10g01169 1129 SMART serkin_6 835 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01169 Trre-Chr10 9412321 9415710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01169 4 1129 Receptor kinase-like Gene Family AT4G36180 67.898 0.0 1486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Trre10g01169 Pkinase 2.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01169 - - gmx:100795838 1779.99