Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01160 ATGGAAAATCCGAAGCCGGAAAAACCGGCGACTGAGGCGGAAACCAAGCAAGTCGAATTAATTGTTTCCGATGTCAAGATGACGGAGAGAGACGGTGGTTATTGTCCGCCTCAAGTAGTTCTCGCTGTTGCCGCCGTGGATAGTGACGTTTTGAAGAAGAAGCGTGGTCGTCCGACGAAAGGACTTCCGAAATCAGCTCCGCCGCCGAAGCAGAAAAAGGAAGATGAGGATGTTTGTTTTATATGCTTTGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGCTGCCCTAAAGCATATCATCCGGCATGTGTCAAGCGAGATGAAGCGTTCTTCCGTTCAAAGGCCAAATGGAATTGTGGTTGGCATATATGTAGCTCTTGTCAAAAAGCATCCCATTATATGTGCTATACGTGTACATATTCTTCGTGCAAGGGGTGTATACAAAATGCTGATTTTGTTTGTGTCAGAGGAAATAAAGGTCTGTGTGGAATATGCAAGAAAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATATATTTGAAAGAGAATCTATCTTTAACATTTGATGAGCTCCTTCAAGCTAAAAACCCATTGAGAGGTGCTACTCCTATGGTACAAACTTCCCATGAACTTCATCATCGTAAAGATGACAAAGGTTCTGGTTCCGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTCTAAAGGACCTTTAGGTGGTGACACAGGTGTGTCTTTGCCTGATTGCACGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCATATATGAAAAATGGTGATACATCTCTCCTCACTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTTAAGAAAAACAATCTGCGTGATCCTCAACAGAAATCCCAGATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTCTTGGCTACATTGAAATGCTAGTGCTCCTTGAGCCCCACTTTCTTATAAAAGACAATACCGGTGCAGAAAAAACTGCTGGAGGAATTAGTGATGCTGTTGCTAATGGAAAGGAGGCCATTGACAATGACAATAAACGGTCGATATTAGTTAATGATAAGAGATGTACAACAAGTAAGAAGGCTGAAGTGCCTGTGCCACTAAATAATAATGATGCATATGCTACAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACTGATGATATTGAAAGGATTCATGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCCAGTGGTGACCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCCTACAAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACCGGAAGGAGGTCATACCCATAGATGAGATTTCGAATCAGGAGTTCTCAGAGGATGAATGCAAGCGATTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATACTAAACAAAGCATTGACATTTCAAGAAATTAGAGTTAATGACTTGTTGGAAGCCGAGAAATTGCGGCTTAATAATCTTCGTGATAGAGCAAAATGCGTGGAGAAGTTGCAGCTACTAAATTCACCGGAGGAACGTCAGCGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCTAATTTGGATTCGTTGTATGAGTCTGATGAAGATGCTGGAGAATCAGATGACAATAAACAAGATGGCAATATGCCTATTTTCTCCAAAATTTGGGATGATGTCTTGAATGGTGTTGGGGGAAGAACAAGAGACTTGACCGTTGCAAGTGACCCAATCAGGAATACATGCTTAGCAAAACAAGATACCTACCCAAACGAAATTGCTACTGATGGCAATGCTAATGTTGTAATGAAATCAGAAGTGTCTAGTGTTGCAGTGGATATTTCATCTCCAGTTCTCTCTACAGGGATTGAGCAGTCATTTGACGATTTTATGAGTGATAAATCATGGCATTATCAGGATCCTTCCGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCTAGTGGGCATTTCCCTCCAGATCTCAGAATATGGAAGATAGGTGACAAACCAGTAAACTCTATATTGTTAACTGATGCACTTGATGGAAAGTGCTCCAAAAATGTGTCATCGCAGAACAACAACCTATTGCTCTCTTTAGGAGCCAGTGTAGCATTGGGTGACAAAGAAAGCAGTCCGGATGGCGGGAGGAATTCAATGACGAATGAAATTTCTGCAGATAGCCAAATCATCGAACAGATAAGAGAACAAAAAGTGGATGATACTTCTACCCAGTCTAATGGTAAAGATGAATCCGTTAAGAGCAATGGATGGCATGAACAGTCACATGTACACCCTTCGCTACAACCAACTGCCTTTTTTGAAAAATTGAATGAGAATCATACCAACAAATTAATGGAGGATCGTGTGATTGAGAAAAACTCTGAAGATATTGGAAATCATGGCTCAAACAGGACTTCTGGTGGTCAGGGTAATAGTGGTCAGAATCATCAGAAGCAATCCGATAGTGAAGACAACTCAGGTCAATCTTCAGGACAAAACTGGAGACACCCAAATGTAAATATTTCTTCCAATTGCTTGGATACCACATCGACTCATGTTTCTGGGACAATAACATCACCTCTTAAGCTGGGATTTGATTTGCACCAACCCCCTTCTCCTCCAGCATGTAATGCAACTACATGGCAGGCTATTATCGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAGGTGGAAGCAATGGAGTCACTTGGTGGCCTGGAATCTCCCACTTCAATCATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTCCAGAGCTTAGCCCAATGCTTGATGCAGGTAAAGGCGATGCATTGAGCTCCACGGGTGATTTACAGTTATTATCTCAATCCACAGCAGCAGAGGAACCATTGCAGCAAGCAGATGTCCAACATCATCAAAGAATATCGGTGGAGCTTTCCTCAAGAAATTCTAAAGTTGATGTGGGTTCAAAGGACATATGTGTTTCAAGTAATCAATGGGAGTCGGGCTCGGAAAATTCTCATATTTTTCCATCCACTGCAACATTGAGCATGACTGTAGACACCACTTGGAGACTTGGATTGGACAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACGCGAATTGGGCAGTAGGACAGACGGCAGTAAATGAGAACAGAAGCTCAAATTCACGCACTTCTGTAGTAACTCCAAGCTATGGGGATAACCAAACAAGATATGGAAATGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCTGGTTTAGTTAGAGGTAGAGCTCCGTGGAACAGGCAACCGGTATTTGGTGTTGGTAATGGAGGCTCATATAGACCTCCGCCGAGAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAAGGGGCATCCTGTGATTACTTCCACCCATGA 3702 0.4219 MENPKPEKPATEAETKQVELIVSDVKMTERDGGYCPPQVVLAVAAVDSDVLKKKRGRPTKGLPKSAPPPKQKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSSCKGCIQNADFVCVRGNKGLCGICKKTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWIYLKENLSLTFDELLQAKNPLRGATPMVQTSHELHHRKDDKGSGSENSCIDIESNNLKNKKSKGPLGGDTGVSLPDCTRWASKELLEFVSYMKNGDTSLLTQFDVQNLLLEYVKKNNLRDPQQKSQIVCDSRLVNLFGKARLGYIEMLVLLEPHFLIKDNTGAEKTAGGISDAVANGKEAIDNDNKRSILVNDKRCTTSKKAEVPVPLNNNDAYATINAHNINLIYLRRSLMESLTDDIERIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVIPIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLEAEKLRLNNLRDRAKCVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSLYESDEDAGESDDNKQDGNMPIFSKIWDDVLNGVGGRTRDLTVASDPIRNTCLAKQDTYPNEIATDGNANVVMKSEVSSVAVDISSPVLSTGIEQSFDDFMSDKSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLRIWKIGDKPVNSILLTDALDGKCSKNVSSQNNNLLLSLGASVALGDKESSPDGGRNSMTNEISADSQIIEQIREQKVDDTSTQSNGKDESVKSNGWHEQSHVHPSLQPTAFFEKLNENHTNKLMEDRVIEKNSEDIGNHGSNRTSGGQGNSGQNHQKQSDSEDNSGQSSGQNWRHPNVNISSNCLDTTSTHVSGTITSPLKLGFDLHQPPSPPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFPELSPMLDAGKGDALSSTGDLQLLSQSTAAEEPLQQADVQHHQRISVELSSRNSKVDVGSKDICVSSNQWESGSENSHIFPSTATLSMTVDTTWRLGLDSTHLEWGGMDQRNANANWAVGQTAVNENRSSNSRTSVVTPSYGDNQTRYGNDRFSVPRDRGFPGHGREPGLVRGRAPWNRQPVFGVGNGGSYRPPPRGQRVCKFYESGYCKKGASCDYFHP 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01160 1233 SUPERFAMILY SWIB/MDM2 domain 281 358 IPR036885 -
Trre10g01160 1233 SMART swib_2 280 362 IPR019835 -
Trre10g01160 1233 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 953 1233 - -
Trre10g01160 1233 Pfam SWIB/MDM2 domain 284 357 IPR003121 -
Trre10g01160 1233 MobiDBLite consensus disorder prediction 814 835 - -
Trre10g01160 1233 Gene3D - 707 763 IPR035445 -
Trre10g01160 1233 MobiDBLite consensus disorder prediction 814 845 - -
Trre10g01160 1233 CDD PHD5_NSD 78 123 - -
Trre10g01160 1233 SMART PHD_3 78 124 IPR001965 -
Trre10g01160 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 167 IPR013083 -
Trre10g01160 1233 FunFam Zinc finger CCCH domain-containing protein 19 419 548 - -
Trre10g01160 1233 SMART rtf1 418 528 IPR004343 GO:0003677
Trre10g01160 1233 MobiDBLite consensus disorder prediction 877 925 - -
Trre10g01160 1233 Gene3D SWIB/MDM2 domain 276 366 IPR036885 -
Trre10g01160 1233 SMART gyf_5 706 761 IPR003169 GO:0005515
Trre10g01160 1233 CDD SWIB-MDM2_like 281 357 - -
Trre10g01160 1233 ProSiteProfiles SWIB/MDM2 domain profile. 276 359 IPR003121 -
Trre10g01160 1233 Coils Coil 555 575 - -
Trre10g01160 1233 SUPERFAMILY FYVE/PHD zinc finger 52 123 IPR011011 -
Trre10g01160 1233 SUPERFAMILY Plus3-like 420 548 IPR036128 GO:0003677
Trre10g01160 1233 FunFam Zinc finger CCCH domain-containing protein 19 69 168 - -
Trre10g01160 1233 ProSiteProfiles GYF domain profile. 705 759 IPR003169 GO:0005515
Trre10g01160 1233 Gene3D - 419 548 IPR036128 GO:0003677
Trre10g01160 1233 MobiDBLite consensus disorder prediction 589 621 - -
Trre10g01160 1233 ProSitePatterns Zinc finger PHD-type signature. 79 139 IPR019786 -
Trre10g01160 1233 SUPERFAMILY CCCH zinc finger 1208 1232 IPR036855 GO:0046872
Trre10g01160 1233 ProSiteProfiles Plus3 domain profile. 418 551 IPR004343 GO:0003677
Trre10g01160 1233 Pfam Plus-3 domain 423 526 IPR004343 GO:0003677
Trre10g01160 1233 ProSiteProfiles Zinc finger C3H1-type profile. 1208 1233 IPR000571 GO:0046872
Trre10g01160 1233 Pfam GYF domain 708 751 IPR003169 GO:0005515
Trre10g01160 1233 SUPERFAMILY GYF domain 704 758 IPR035445 -
Trre10g01160 1233 MobiDBLite consensus disorder prediction 1139 1164 - -
Trre10g01160 1233 MobiDBLite consensus disorder prediction 873 925 - -
Trre10g01160 1233 ProSiteProfiles Zinc finger PHD-type profile. 76 142 IPR019787 -
Trre10g01160 1233 CDD GYF 705 758 IPR003169 GO:0005515
Trre10g01160 1233 MobiDBLite consensus disorder prediction 1139 1188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01160 Trre-Chr10 9310292 9316384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01160 75 156 PHD Transcription Factor Family AT5G36670 34.524 3.75e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre10g01160 Plus-3 2.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01160 - - aprc:113869503 1820.05