Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01159 ATGGAAGAACTACAGCAGCAACAGATTCAGCAACCGGTGGTGATTCCGGTGACCGGAGAAGTTAGGGTTTCTGAGAATTCTCAGATGATGATCGGAGTCAACGCTTCCGATGTTGACTTCAGGATGACCGACGGTGGTAGTTGTGACACTGTTTTGAAAAGGAAACGTGGTCGTCCTCCGAAAGGAACTCTTCCTCCTCATCCACGGTTGAAAAAGCCGAAAGATGAAGAAGATGTTTGTTTTATTTGCTTCGACGGTGGTTCACTTGTTCTCTGTGATTATCGGGGTTGTCCTAAGGCCTATCATCCTGCGTGTGTGAAGCGTGATGAAGAGTTTTTCCGTTTAACCGAGAAATGGAATTGTGGTTGGCATCTATGTAGCGATTGTGGCAAATCATGCCACTACATGTGCTATACTTGTACATATTCCCTGTGCAAGGGATGTACCAAAAAAGAATCCGATTTTGTTAGTGTCAGAGGAAACAAAGGTTTGTGTGGAGCATGCAAGAGGACAATAATGCTGATCGAAAACAGTGCCCTGGGAATTAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTACTTGAAAGAAAAACTATCTCTTGATTTTGATGAGATCCATCGAGCTAAAAATCCATGGAAAAGTGCTGTTCGTGCGAGTTGCAAGGTTCAAACTCCCCGAAAACTTCATCATCTTAAAGTTGACAATGGTTATGGATCCGAGAATTCCTGTGTAGTTGATTCAAATAGTCCAATAAACAAGAAGGTTAAGGAAAATATTTGGGATAGTTTCTTGGACGGTACTGGACACAATGCACAAGACTTGTCGACTACCTGTGAGCTAAATGGAAATACATGTGTAATAAAGAACCAAATCAATCCTAATGACTCAGCAATTGATGATGCCACTAATCCAAGAGTTGCGAGACTAAGAGAACCAGTCTGGCATTATCAGGATACAAATGGGGAGGTTCATGGTCCTGTTAGTATGTTGTTTCTGTGCAAGTTGAAAGGAACTGAACGTCTCCCTCTAGATCTCAGAATATGGAGGATAGATGAGAAACAAGAGAACTCTAGATTATTTTCCGATGCACTGAGTTTGAAGTGTTTCCAAAAAGCATCATTGCCACTGAACTGTGAACAACAGTCTTTGGGGGCCAGTGTTGCATTAGAAACCACCATAGAAAATAGTCAGGGTGGTCTTAGCAATGAAACAAGGAGTGAAATTTGTGCTAACAACGAAACTGTCAAGCAGGGCGAGGAGGAAAAGGTGGGTGATACTTATACCCCACCTAATGGTACAGATGAATCTGTTAAGAGCAATGGAGGGCACACTCCGTCTCCTGGTTTGACTACACAAGCAGATGGGAATATAAGTGACGGGCAAAGTGGTCATTTTGAACGAAGGGAAGAGTCACCCAAATGTGACATTTCTTGTCATGATGGTCCCGACGTACACCCTGCACTACCTTCAAATGCCTTTCATGAGAAATTGAATGACAAACCTGATAAATTGGTGGAAGGTCATGGGAATGAGCAAAAATTTGAAGTGAATGGAAATTTGGGTTCCAATAGGTCTTCCGAGGGTCCGAGTAATAGTGGGCAAAGTGATCAGAAGCAATCTGACAATGAAGAGAATTCAGGCCAATCTTCTGGTCAGAATTGGAGAGGCCCTAGTGTAGTTCATCATCCACCAATGGACGCTTCTTCATGGATAGCATCAATCTTTGGCGATACTGATACATTAGTTGATGATTCAGTTTCAGATCTGTTGGAACAAGTAGCAGCAAAGGAGAAGGATGGTGTATTGGAAACTCCCACAGCAATAGAGTGGGATGATGAGTTGACTGAGGGTGCTATAACTGATTGTTTCAGTTTTGCTGCTAATGCACTTAGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCTCAAGTGATTTACATTTACCATCTCGATCCACTGCAGCAGAGGAGCCATTTCTGCAAGTAAACATGCATAATCATCAAACTATATGTGGGGAACAATCCTCAAAAGCTCCTGAAGTTGAGTCTACTTTTTCGGGTATTAGCTGGAATCCAGCTCATCAATTTTCATGGGATCCGACTCGTTGA 2148 0.4269 MEELQQQQIQQPVVIPVTGEVRVSENSQMMIGVNASDVDFRMTDGGSCDTVLKRKRGRPPKGTLPPHPRLKKPKDEEDVCFICFDGGSLVLCDYRGCPKAYHPACVKRDEEFFRLTEKWNCGWHLCSDCGKSCHYMCYTCTYSLCKGCTKKESDFVSVRGNKGLCGACKRTIMLIENSALGIKCEVDFDDKSSWEYLFKVYWMYLKEKLSLDFDEIHRAKNPWKSAVRASCKVQTPRKLHHLKVDNGYGSENSCVVDSNSPINKKVKENIWDSFLDGTGHNAQDLSTTCELNGNTCVIKNQINPNDSAIDDATNPRVARLREPVWHYQDTNGEVHGPVSMLFLCKLKGTERLPLDLRIWRIDEKQENSRLFSDALSLKCFQKASLPLNCEQQSLGASVALETTIENSQGGLSNETRSEICANNETVKQGEEEKVGDTYTPPNGTDESVKSNGGHTPSPGLTTQADGNISDGQSGHFERREESPKCDISCHDGPDVHPALPSNAFHEKLNDKPDKLVEGHGNEQKFEVNGNLGSNRSSEGPSNSGQSDQKQSDNEENSGQSSGQNWRGPSVVHHPPMDASSWIASIFGDTDTLVDDSVSDLLEQVAAKEKDGVLETPTAIEWDDELTEGAITDCFSFAANALSPMLDAGKGDALSSSSDLHLPSRSTAAEEPFLQVNMHNHQTICGEQSSKAPEVESTFSGISWNPAHQFSWDPTR 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01159 715 CDD PHD5_NSD 79 124 - -
Trre10g01159 715 MobiDBLite consensus disorder prediction 423 506 - -
Trre10g01159 715 SUPERFAMILY FYVE/PHD zinc finger 57 124 IPR011011 -
Trre10g01159 715 ProSitePatterns Zinc finger PHD-type signature. 80 140 IPR019786 -
Trre10g01159 715 MobiDBLite consensus disorder prediction 472 491 - -
Trre10g01159 715 FunFam Zinc finger CCCH domain-containing protein 19 69 170 - -
Trre10g01159 715 MobiDBLite consensus disorder prediction 526 567 - -
Trre10g01159 715 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 284 570 - -
Trre10g01159 715 SUPERFAMILY GYF domain 320 376 IPR035445 -
Trre10g01159 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 171 IPR013083 -
Trre10g01159 715 MobiDBLite consensus disorder prediction 52 73 - -
Trre10g01159 715 MobiDBLite consensus disorder prediction 524 574 - -
Trre10g01159 715 Gene3D - 324 380 IPR035445 -
Trre10g01159 715 SMART PHD_3 79 125 IPR001965 -
Trre10g01159 715 MobiDBLite consensus disorder prediction 440 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01159 Trre-Chr10 9296189 9299893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01159 77 151 PHD Transcription Factor Family AT4G14920 38.667 2.82e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01159 - - tpra:123904147 1337.4