Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01140 ATGGAGTGCGTTGAAACAGCGTTGAAAACAAGTTTAAGGAAAGACATGATTCCTCAAACATTTGTTGATGAGCTTACAGGACTTAATGCACAAAATGGAACAACCTCAGACGATTTTTTCGTCGACGACCTTCTTGATTTCTCTCACGTTGAAGAACAACAACAACAACAAGACGAAGAACAACAACAACAACAACAAGACTCTGTTTTTGTCTCCCAAAAACAAACCCATGAAATTTCAAACCTTAACAACAGCAACAGTAACAGTTTTTCTCTCAAAAATGATTATGTTTCTCTACCCACTAGCGACCTCAACGTCCCGAGTGATGATGTAGCAGATGATTTAGAATGGCTTTCACATTTTGTTGAAGATTCTGATTCTTTCTCGGAATTTTCTGCTGTTATGCCGGTTGTAACTTTAACAACAACAACGGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGCCCATGCCCAAGAGTGAAAGCCCGGGCCCGGTTTTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGAACAAGAACCGGTGTTCGGGTTTGGCCATTCGGGTCAAATACTTTAACCGAGTCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCGTCTCCAACTAGTCCTTTGTTGATTTACACCAACTTGGTACAAAAATTTGACTCGGTTCCGGTGAAGAAACCGAAGAAAATGACGGGTTTTAATGGGTCGGGTCACGGCACGGTGGTTTCAGCGCCGGCGGCGCCGCGTCGGTGCAGTCATTGCGGTGTAACCAAGACTCCTCAGTGGCGAACGGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCATGTGGGGTCCGTTATAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTTCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA 1041 0.4409 MECVETALKTSLRKDMIPQTFVDELTGLNAQNGTTSDDFFVDDLLDFSHVEEQQQQQDEEQQQQQQDSVFVSQKQTHEISNLNNSNSNSFSLKNDYVSLPTSDLNVPSDDVADDLEWLSHFVEDSDSFSEFSAVMPVVTLTTTTEKNPKGVVVSEPMPKSESPGPVFTTFKTPVQTKARSKRTRTGVRVWPFGSNTLTESSSSSTTSSSTSSSPTSPLLIYTNLVQKFDSVPVKKPKKMTGFNGSGHGTVVSAPAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIETGLSPSPVVPSF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01140 346 Gene3D - 252 327 IPR013088 GO:0006355|GO:0008270
Trre10g01140 346 PANTHER GATA TRANSCRIPTION FACTOR 28 326 - -
Trre10g01140 346 MobiDBLite consensus disorder prediction 51 86 - -
Trre10g01140 346 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Trre10g01140 346 FunFam GATA transcription factor 251 335 - -
Trre10g01140 346 MobiDBLite consensus disorder prediction 189 216 - -
Trre10g01140 346 SMART GATA_3 254 308 IPR000679 GO:0006355|GO:0043565
Trre10g01140 346 CDD ZnF_GATA 259 307 IPR000679 GO:0006355|GO:0043565
Trre10g01140 346 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Trre10g01140 346 PIRSF Txn_fac_GATA_plant 1 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre10g01140 346 MobiDBLite consensus disorder prediction 149 216 - -
Trre10g01140 346 MobiDBLite consensus disorder prediction 57 86 - -
Trre10g01140 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 316 - -
Trre10g01140 346 Pfam GATA zinc finger 260 294 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01140 Trre-Chr10 9131816 9132981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01140 1 338 C2C2-Gata Transcription Factor Family AT3G51080 48.387 4.98e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre10g01140 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01140 - - psat:127120186 448.743