Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01139 ATGCTTTACCAAACTCCCTATCCTCTTCTCTTTCAATTTCATCCCTTACCTTCAACTTCTTCTTCTTTCACCATTCCTCTCTCAACCATATCACAACTCCAAATTCCTCTCACAAAGGCTTCAAAAACTGAAATGGAGTGCGTTGAAACAGCGTTGAAAACAAGTTTAAGGAAAGACATGATTCCTCAAACATTTGTTGATGAGCTTACAGGACTTAATGCACAAAATGGAACAACCTCAGACGATTTTTTCGTCGACGACCTTCTTGATTTCTCTCACGTTGAAGAACAACAACAACAACAAGACGAAGAACAACAACAACAACAACAAGACTCTGTTTTTGTCTCCCAAAAACAAACCCATGAAATTTCAAACCTTAACAACAGCAACAGTAACAGTTTTTCTCTCAAAAATGATTATGTTTCTCTACCCACTAGCGACCTCAACGTCCCGAGTGATGATGTAGCAGATGATTTAGAATGGCTTTCACATTTTGTTGAAGATTCTGATTCTTTCTCGGAATTTTCTGCTGTTATGCCGGTTGTAACTTTAACAACAACAACGGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGCCCATGCCCAAGAGTGAAAGCCCGGGCCCGGTTTTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGAACAAGAACCGGTGTTCGGGTTTGGCCATTCGGGTCAAATACTTTAACCGAGTCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCGTCTCCAACTAGTCCTTTGTTGATTTACACCAACTTGGTACAAAAATTTGACTCGGTTCCGGTGAAGAAACCGAAGAAAATGACGGGTTTTAATGGGTCGGGTCACGGCACGGTGGTTTCAGCGCCGGCGGCGCCGCGTCGGTGCAGTCATTGCGGTGTAACCAAGACTCCTCAGTGGCGAACGGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCATGTGGGGTCCGTTATAAATCGGGTCGGTTATTACCCGAATATCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCAAACCACCACCGGAAAGTTCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA 1173 0.4348 MLYQTPYPLLFQFHPLPSTSSSFTIPLSTISQLQIPLTKASKTEMECVETALKTSLRKDMIPQTFVDELTGLNAQNGTTSDDFFVDDLLDFSHVEEQQQQQDEEQQQQQQDSVFVSQKQTHEISNLNNSNSNSFSLKNDYVSLPTSDLNVPSDDVADDLEWLSHFVEDSDSFSEFSAVMPVVTLTTTTEKNPKGVVVSEPMPKSESPGPVFTTFKTPVQTKARSKRTRTGVRVWPFGSNTLTESSSSSTTSSSTSSSPTSPLLIYTNLVQKFDSVPVKKPKKMTGFNGSGHGTVVSAPAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIETGLSPSPVVPSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01139 390 ProSitePatterns GATA-type zinc finger domain. 304 329 IPR000679 GO:0006355|GO:0043565
Trre10g01139 390 SMART GATA_3 298 352 IPR000679 GO:0006355|GO:0043565
Trre10g01139 390 MobiDBLite consensus disorder prediction 95 129 - -
Trre10g01139 390 MobiDBLite consensus disorder prediction 101 129 - -
Trre10g01139 390 PANTHER GATA TRANSCRIPTION FACTOR 72 370 - -
Trre10g01139 390 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 299 360 - -
Trre10g01139 390 FunFam GATA transcription factor 295 379 - -
Trre10g01139 390 CDD ZnF_GATA 303 351 IPR000679 GO:0006355|GO:0043565
Trre10g01139 390 MobiDBLite consensus disorder prediction 233 260 - -
Trre10g01139 390 Pfam GATA zinc finger 304 338 IPR000679 GO:0006355|GO:0043565
Trre10g01139 390 MobiDBLite consensus disorder prediction 193 260 - -
Trre10g01139 390 ProSiteProfiles GATA-type zinc finger domain profile. 298 334 IPR000679 GO:0006355|GO:0043565
Trre10g01139 390 Gene3D - 296 371 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01139 Trre-Chr10 9131547 9132981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01139 45 382 C2C2-Gata Transcription Factor Family AT3G51080 48.387 8.81e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre10g01139 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01139 - - psat:127120186 499.59