Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01118 ATGAATGTTCCTGGCCTCACTCGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGGTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCGGCACAATAACTTGAACAATTCATTTCTCACCCCACAAGAGGCATCATTTGGTACGATTTCACCAATGAACGGTCTTGATCAGCTCCCAGCACAAAGTTTAGCCACTCTTCAAGCCGCGGGACTTGGTAGGTCAACTGTGAAACCAGGCTTATCAATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTGGAAAACCCGAGGTTGAGATTTGGAGAAGGGCAACAACAACTTTTGAGCAGCAATAAACCAACAAATCTTCTACATGGAGTTCCTACTAACATGGAGCCAAAGCAGCTTGCAAATTTGCACCAATCTGCACAATCCCTCGGCAATTTGAATATGCGAGCTACTAGTTGA 447 0.4497 MNVPGLTRENVASHLQKYRLYLRRLSGVSRHNNLNNSFLTPQEASFGTISPMNGLDQLPAQSLATLQAAGLGRSTVKPGLSMPLMDQRNLFSLENPRLRFGEGQQQLLSSNKPTNLLHGVPTNMEPKQLANLHQSAQSLGNLNMRATS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01118 148 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 138 IPR044841 GO:0003700|GO:0006355
Trre10g01118 148 Gene3D - 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01118 Trre-Chr10 8999715 9000297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01118 1 125 Response Regulator Gene Family AT3G16857 58.571 1.15e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre10g01118 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01118 - K14491 gmx:100814930 242.662