Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01106 ATGGCAGGTTTATTTTCATTAGGAAGAAGCGAAGAACAAAATCAACAGAATAACAATAATAACAATCCAGTAACTGAATTCTGGTATAATAACAGCAATAACAAAAATGAAGATTCGGTTTCTGCAGCATACCGTGGTGGTTTTGAGATTTGGAACGACCAGCAGCAAACTCATCATCAACAGCAATTTTTTCCTCTTCAGCTTCAGCAGCAGCAGCAAGATCTTTACACCGCCGCCTCGGGTGGTGTTGTGTTAGGAGTTGGACCGAGTAGGGTTTGTTCATCTGATGATAATAGATCTACGGTGTTTGTTGCGTCGGGAAGTGGTGGTGGGATAAGTTGTCAAGATTGTGGTAATCAAGCTAAGAAAGATTGTCCTCATGTTAGATGTAGAACTTGTTGTAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAAAGTACTTGGGTTCCGGCTGCACGACGCCGCGAACGACAACAGCAGCAGCAACAACAGCAAGCTCAACAACCTCATGGAGAAAGAGATCTTAACAATTCTTCTCTTGCTTGCACTCGTTTACCTATAAACCCTTCACTCACTGTCTCTCCAACAGCAACAGGGTTACTAGATGAGGTGAATTTTCCGGCGGTGGTGAGTACACCGGCAGAATTCCGGTGTGTGCGAGTTTGCTCGGTTGACGAGTCCGAGGAAGAGTATGCATATTCAACGGCTGTGAACATTGGAGGACATGTTTTCAGAGGAATTTTGTATGATTATGGTCCAGATAATCATGGGAGTAATAATTATAACATGGCTGCCGGAAACACCTCATCTAGTGGTGGTGGTGGTGGTGGTGGAGCGGTTGTTCAGCCGTTAGAGCTTATATCTGCTGTTCCTGCTACTGCTGTTGTTGGTGTTGGGGCAATTGTTGATCCTTCATCTTTGTATCCAGCTCCACTTAACAGCTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCATCTTGA 996 0.4438 MAGLFSLGRSEEQNQQNNNNNNPVTEFWYNNSNNKNEDSVSAAYRGGFEIWNDQQQTHHQQQFFPLQLQQQQQDLYTAASGGVVLGVGPSRVCSSDDNRSTVFVASGSGGGISCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQAQQPHGERDLNNSSLACTRLPINPSLTVSPTATGLLDEVNFPAVVSTPAEFRCVRVCSVDESEEEYAYSTAVNIGGHVFRGILYDYGPDNHGSNNYNMAAGNTSSSGGGGGGGAVVQPLELISAVPATAVVGVGAIVDPSSLYPAPLNSFMPPSGTQFFPHPRSS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01106 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 314 IPR007818 GO:0003700|GO:0006355
Trre10g01106 331 MobiDBLite consensus disorder prediction 8 32 - -
Trre10g01106 331 MobiDBLite consensus disorder prediction 1 32 - -
Trre10g01106 331 MobiDBLite consensus disorder prediction 153 178 - -
Trre10g01106 331 NCBIfam putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Trre10g01106 331 NCBIfam LRP1 C-terminal domain 207 254 IPR006511 -
Trre10g01106 331 MobiDBLite consensus disorder prediction 154 178 - -
Trre10g01106 331 Pfam Domain of unknown function (DUF702) 111 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01106 Trre-Chr10 8905577 8907204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01106 1 330 C2H2 Transcription Factor Family AT3G51060 44.670 3.60e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre10g01106 DUF702 1.6e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01106 - - gmx:100814589 290.426